2ycl

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{{STRUCTURE_2ycl| PDB=2ycl | SCENE= }}
 
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===complete structure of the corrinoid,iron-sulfur protein including the N-terminal domain with a 4Fe-4S cluster===
 
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{{ABSTRACT_PUBMED_21640123}}
 
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==About this Structure==
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==complete structure of the corrinoid,iron-sulfur protein including the N-terminal domain with a 4Fe-4S cluster==
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[[2ycl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans_z-2901 Carboxydothermus hydrogenoformans z-2901]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YCL OCA].
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<StructureSection load='2ycl' size='340' side='right'caption='[[2ycl]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ycl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans_Z-2901 Carboxydothermus hydrogenoformans Z-2901]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YCL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YCL FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ycl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ycl OCA], [https://pdbe.org/2ycl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ycl RCSB], [https://www.ebi.ac.uk/pdbsum/2ycl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ycl ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q3ACS3_CARHZ Q3ACS3_CARHZ]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Several anaerobic acetogenic, methanogenic, hydrogenogenic, and sulfate-reducing microorganisms are able to use the reductive acetyl-CoA (Wood-Ljungdahl) pathway to convert CO(2) into biomass. The reductive acetyl-CoA pathway consists of two branches connected by the Co/Fe-containing corrinoid iron-sulfur protein (CoFeSP), which transfers a methyl group from a methyltransferase (MeTr)/methyltetrahydrofolate (CH(3)-H(4) folate) complex to the reduced Ni-Ni-[4Fe-4S] cluster (cluster A) of acetyl-CoA synthase. We investigated the CoFeSP and MeTr couple of the hydrogenogenic bacterium Carboxydothermus hydrogenoformans and show that the two proteins are able to catalyze the methyl-group transfer reaction from CH(3)-H(4) folate to the Co(I) center of CoFeSP. We determined the crystal structures of both proteins. The structure of CoFeSP includes the previously unresolved N-terminal domain of the large subunit of CoFeSP, revealing a unique four-helix-bundle-like architecture in which a [4Fe-4S] cluster is shielded by hydrophobic amino acids. It further reveals that the corrinoid and the [4Fe-4S] cluster binding domains are mobile, which is mandatory for the postulated electron transfer between them. Furthermore, we solved the crystal structures of apo-MeTr, CH(3)-H(4)-folate-bound MeTr, and H(4)-folate-bound MeTr, revealing a substrate-induced closure of the CH(3)-H(4) folate binding cavity of MeTr. We observed three different conformations of Asn200 depending on the substrate bound in the active site, demonstrating its conformational modulation by hydrogen-bonding interactions with the substrate. The observed flexibility could be essential to stabilize the transition state during methyl-group transfer. The conformational space and role of Asn200 are likely conserved in homologous cobalamin-dependent MeTrs such as methionine synthase.
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==See Also==
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Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-CoA Pathway.,Goetzl S, Jeoung JH, Hennig SE, Dobbek H J Mol Biol. 2011 Aug 5;411(1):96-109. Epub 2011 May 27. PMID:21640123<ref>PMID:21640123</ref>
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*[[Acetyl-CoA synthase|Acetyl-CoA synthase]]
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*[[Carbon monoxide dehydrogenase|Carbon monoxide dehydrogenase]]
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:021640123</ref><references group="xtra"/>
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</div>
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[[Category: Carboxydothermus hydrogenoformans z-2901]]
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<div class="pdbe-citations 2ycl" style="background-color:#fffaf0;"></div>
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[[Category: Dobbek, H.]]
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[[Category: Goetzl, S.]]
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==See Also==
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[[Category: Hennig, S E.]]
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*[[Acetyl-CoA synthase 3D structures|Acetyl-CoA synthase 3D structures]]
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[[Category: Jeoung, J H.]]
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*[[Carbon monoxide dehydrogenase 3D structures|Carbon monoxide dehydrogenase 3D structures]]
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[[Category: Transferase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Carboxydothermus hydrogenoformans Z-2901]]
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[[Category: Large Structures]]
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[[Category: Dobbek H]]
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[[Category: Goetzl S]]
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[[Category: Hennig SE]]
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[[Category: Jeoung JH]]

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complete structure of the corrinoid,iron-sulfur protein including the N-terminal domain with a 4Fe-4S cluster

PDB ID 2ycl

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