This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ghc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:27, 14 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_2ghc| PDB=2ghc | SCENE= }}
 
-
===Conformational mobility in the active site of a heme peroxidase===
 
-
{{ABSTRACT_PUBMED_16762924}}
 
-
==About this Structure==
+
==Conformational mobility in the active site of a heme peroxidase==
-
[[2ghc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GHC OCA].
+
<StructureSection load='2ghc' size='340' side='right'caption='[[2ghc]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2ghc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GHC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GHC FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ghc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ghc OCA], [https://pdbe.org/2ghc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ghc RCSB], [https://www.ebi.ac.uk/pdbsum/2ghc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ghc ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q43758_SOYBN Q43758_SOYBN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/2ghc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ghc ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Ascorbate peroxidase|Ascorbate peroxidase]]
+
*[[Ascorbate peroxidase 3D structures|Ascorbate peroxidase 3D structures]]
-
 
+
*[[Plasmid segregation protein ParM|Plasmid segregation protein ParM]]
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:016762924</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Glycine max]]
[[Category: Glycine max]]
-
[[Category: L-ascorbate peroxidase]]
+
[[Category: Large Structures]]
-
[[Category: Badyal, S K.]]
+
[[Category: Badyal SK]]
-
[[Category: Joyce, M G.]]
+
[[Category: Joyce MG]]
-
[[Category: Moody, P C.]]
+
[[Category: Moody PC]]
-
[[Category: Raven, E L.]]
+
[[Category: Raven EL]]
-
[[Category: Sharp, K H.]]
+
[[Category: Sharp KH]]
-
[[Category: Orthogonal bundle]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Conformational mobility in the active site of a heme peroxidase

PDB ID 2ghc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ghc"
Personal tools