3dnn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3dnn" [edit=sysop:move=sysop])
Current revision (01:43, 21 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3dnn| PDB=3dnn | SCENE= }}
 
-
===Molecular structure for the HIV-1 gp120 trimer in the unliganded state===
 
-
{{ABSTRACT_PUBMED_18668044}}
 
-
==About this Structure==
+
==Molecular structure for the HIV-1 gp120 trimer in the unliganded state==
-
[[3dnn]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Hiv-1_m:b_hxb2r Hiv-1 m:b_hxb2r]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNN OCA].
+
<SX load='3dnn' size='340' side='right' viewer='molstar' caption='[[3dnn]], [[Resolution|resolution]] 20.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3dnn]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/HIV-1_M:B_HXB2R HIV-1 M:B_HXB2R]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DNN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DNN FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 20&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dnn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dnn OCA], [https://pdbe.org/3dnn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dnn RCSB], [https://www.ebi.ac.uk/pdbsum/3dnn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dnn ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/3dnn_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dnn ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The envelope glycoproteins (Env) of human and simian immunodeficiency viruses (HIV and SIV, respectively) mediate virus binding to the cell surface receptor CD4 on target cells to initiate infection. Env is a heterodimer of a transmembrane glycoprotein (gp41) and a surface glycoprotein (gp120), and forms trimers on the surface of the viral membrane. Using cryo-electron tomography combined with three-dimensional image classification and averaging, we report the three-dimensional structures of trimeric Env displayed on native HIV-1 in the unliganded state, in complex with the broadly neutralizing antibody b12 and in a ternary complex with CD4 and the 17b antibody. By fitting the known crystal structures of the monomeric gp120 core in the b12- and CD4/17b-bound conformations into the density maps derived by electron tomography, we derive molecular models for the native HIV-1 gp120 trimer in unliganded and CD4-bound states. We demonstrate that CD4 binding results in a major reorganization of the Env trimer, causing an outward rotation and displacement of each gp120 monomer. This appears to be coupled with a rearrangement of the gp41 region along the central axis of the trimer, leading to closer contact between the viral and target cell membranes. Our findings elucidate the structure and conformational changes of trimeric HIV-1 gp120 relevant to antibody neutralization and attachment to target cells.
-
==See Also==
+
Molecular architecture of native HIV-1 gp120 trimers.,Liu J, Bartesaghi A, Borgnia MJ, Sapiro G, Subramaniam S Nature. 2008 Sep 4;455(7209):109-13. Epub 2008 Jul 30. PMID:18668044<ref>PMID:18668044</ref>
-
*[[Gp120|Gp120]]
+
-
*[[Hiv env proteins|Hiv env proteins]]
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:018668044</ref><references group="xtra"/>
+
</div>
-
[[Category: Hiv-1 m:b_hxb2r]]
+
<div class="pdbe-citations 3dnn" style="background-color:#fffaf0;"></div>
-
[[Category: Bartesaghi, A.]]
+
 
-
[[Category: Borgnia, M J.]]
+
==See Also==
-
[[Category: Liu, J.]]
+
*[[Gp120 3D structures|Gp120 3D structures]]
-
[[Category: Sapiro, G.]]
+
== References ==
-
[[Category: Subramaniam, S.]]
+
<references/>
-
[[Category: Aid]]
+
__TOC__
-
[[Category: Apoptosis]]
+
</SX>
-
[[Category: Cleavage on pair of basic residue]]
+
[[Category: HIV-1 M:B_HXB2R]]
-
[[Category: Envelope glycoprotein]]
+
[[Category: Large Structures]]
-
[[Category: Envelope protein]]
+
[[Category: Bartesaghi A]]
-
[[Category: Fusion protein]]
+
[[Category: Borgnia MJ]]
-
[[Category: Gp120]]
+
[[Category: Liu J]]
-
[[Category: Hiv-1]]
+
[[Category: Sapiro G]]
-
[[Category: Host-virus interaction]]
+
[[Category: Subramaniam S]]
-
[[Category: Immunodeficiency virus]]
+
-
[[Category: Lipoprotein]]
+
-
[[Category: Membrane]]
+
-
[[Category: Palmitate]]
+
-
[[Category: Viral immunoevasion]]
+
-
[[Category: Viral protein]]
+
-
[[Category: Virion]]
+

Current revision

Molecular structure for the HIV-1 gp120 trimer in the unliganded state

3dnn, resolution 20.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools