This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Template:STRUCTURE 2oar
From Proteopedia
(Difference between revisions)
| Line 2: | Line 2: | ||
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2oar]], [[Resolution|resolution]] 3.50Å (<scene name='initialview01'>default scene</scene>)}}} | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2oar]], [[Resolution|resolution]] 3.50Å (<scene name='initialview01'>default scene</scene>)}}} | ||
|LIGAND= <scene name='pdbligand=AU:GOLD+ION'>AU</scene> | |LIGAND= <scene name='pdbligand=AU:GOLD+ION'>AU</scene> | ||
| - | |GENE= mscL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=419947 | + | |GENE= mscL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=419947 MYCTA]) |
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oar OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oar RCSB], [http://www.ebi.ac.uk/pdbsum/2oar PDBsum]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oar OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oar RCSB], [http://www.ebi.ac.uk/pdbsum/2oar PDBsum]</span> | ||
| - | + | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/2oarA02 2Oara02], [http://www.cathdb.info/domain/2oarC02 2Oarc02], [http://www.cathdb.info/domain/2oarE02 2Oare02]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001185 Ipr001185], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR019823 Ipr019823]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01741 PF01741]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138973 d2oara1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138974 d2oarb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138975 d2oarc1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138976 d2oard1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138977 d2oare1]</span> | |
| - | + | ||
| - | + | ||
| - | |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001185 Ipr001185]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01741 PF01741]<br> | + | |
|uPDB=2OAR|CONSURF={{!}}- | |uPDB=2OAR|CONSURF={{!}}- | ||
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
| - | {{!}} '''Toggle Conservation Colors:''' | ||
| - | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
| - | Rows = identical sequences: | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>A [x]</text> | ||
| - | <name>jmb_2oar_A</name> | ||
| - | <title>toggle chain A</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>B [x]</text> | ||
| - | <name>jmb_2oar_B</name> | ||
| - | <title>toggle chain B</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>C [x]</text> | ||
| - | <name>jmb_2oar_C</name> | ||
| - | <title>toggle chain C</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>D [x]</text> | ||
| - | <name>jmb_2oar_D</name> | ||
| - | <title>toggle chain D</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
| - | <jmol> | ||
| - | <jmolButton> | ||
| - | <script></script> | ||
| - | <text>E [x]</text> | ||
| - | <name>jmb_2oar_E</name> | ||
| - | <title>toggle chain E</title> | ||
| - | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
| - | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
| - | </jmolButton> | ||
| - | </jmol> | ||
}} | }} | ||
Current revision
| |||||||
| 2oar, resolution 3.50Å () | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | mscL (MYCTA) | ||||||
| |||||||
| |||||||
| Resources: | FirstGlance, OCA, RCSB, PDBsum | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
