This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3hxk
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3hxk| PDB=3hxk | SCENE= }} | ||
| - | ===Crystal Structure of a sugar hydrolase (YeeB) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR108=== | ||
| - | == | + | ==Crystal Structure of a sugar hydrolase (YeeB) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR108== |
| - | [[3hxk]] is a 4 chain structure with sequence from [ | + | <StructureSection load='3hxk' size='340' side='right'caption='[[3hxk]], [[Resolution|resolution]] 3.20Å' scene=''> |
| - | [[ | + | == Structural highlights == |
| - | [[Category: Acton, T B | + | <table><tr><td colspan='2'>[[3hxk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"lactococcus_lactis_subsp._diacitilactis_(sic)"_(garvie_and_farrow_1982)_schleifer_et_al._1986 "lactococcus lactis subsp. diacitilactis (sic)" (garvie and farrow 1982) schleifer et al. 1986]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HXK FirstGlance]. <br> |
| - | [[Category: Ciccosanti,C | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Everett, J K | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">L427, L42784, LL0430, yeeB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1360 "Lactococcus lactis subsp. diacitilactis (sic)" (Garvie and Farrow 1982) Schleifer et al. 1986])</td></tr> |
| - | [[Category: Foote,E L | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hxk OCA], [https://pdbe.org/3hxk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hxk RCSB], [https://www.ebi.ac.uk/pdbsum/3hxk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hxk ProSAT], [https://www.topsan.org/Proteins/NESGC/3hxk TOPSAN]</span></td></tr> |
| - | [[Category: Forouhar,F | + | </table> |
| - | [[Category: Hunt,J F | + | == Evolutionary Conservation == |
| - | [[Category: Maglaqui,M | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Mao,M | + | Check<jmol> |
| - | [[Category: Montelione, G T | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hx/3hxk_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Nair, R | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Rost, B | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Seetharaman, J | + | </jmolCheckbox> |
| - | [[Category: Su, M | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hxk ConSurf]. |
| - | [[Category: Tong,L | + | <div style="clear:both"></div> |
| - | [[Category: Xiao,R | + | __TOC__ |
| - | [[Category: Zhao,L | + | </StructureSection> |
| - | [[Category: Alpha-beta protein | + | [[Category: Large Structures]] |
| + | [[Category: Acton, T B]] | ||
| + | [[Category: Ciccosanti, C]] | ||
| + | [[Category: Everett, J K]] | ||
| + | [[Category: Foote, E L]] | ||
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Maglaqui, M]] | ||
| + | [[Category: Mao, M]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Nair, R]] | ||
| + | [[Category: Rost, B]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Su, M]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Zhao, L]] | ||
| + | [[Category: Alpha-beta protein]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of a sugar hydrolase (YeeB) from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR108
| |||||||||||
Categories: Large Structures | Acton, T B | Ciccosanti, C | Everett, J K | Foote, E L | Forouhar, F | Hunt, J F | Maglaqui, M | Mao, M | Montelione, G T | Structural genomic | Nair, R | Rost, B | Seetharaman, J | Su, M | Tong, L | Xiao, R | Zhao, L | Alpha-beta protein | Hydrolase | Nesg | PSI, Protein structure initiative

