3ikh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:20, 27 November 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ikh| PDB=3ikh | SCENE= }}
 
-
===Crystal structure of Ribokinase in Complex with ATP and glycerol in the active site from Klebsiella pneumoniae===
 
-
==About this Structure==
+
==Crystal structure of Ribokinase in Complex with ATP and glycerol in the active site from Klebsiella pneumoniae==
-
[[3ikh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_mgh_78578 Klebsiella pneumoniae subsp. pneumoniae mgh 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IKH OCA].
+
<StructureSection load='3ikh' size='340' side='right'caption='[[3ikh]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
-
[[Category: Klebsiella pneumoniae subsp. pneumoniae mgh 78578]]
+
== Structural highlights ==
-
[[Category: Ribokinase]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IKH FirstGlance]. <br>
-
[[Category: Burley, S K.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Satyanarayana, L.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ikh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ikh OCA], [https://pdbe.org/3ikh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ikh RCSB], [https://www.ebi.ac.uk/pdbsum/3ikh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ikh ProSAT]</span></td></tr>
-
[[Category: Swaminathan, S.]]
+
</table>
-
[[Category: 11206l1]]
+
== Evolutionary Conservation ==
-
[[Category: Atp]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: D-ribose metabolic process]]
+
Check<jmol>
-
[[Category: Kinase]]
+
<jmolCheckbox>
-
[[Category: New york sgx research center for structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/3ikh_consurf.spt"</scriptWhenChecked>
-
[[Category: Nysgxrc]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Pfkb family]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: Psi-ii]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ikh ConSurf].
-
[[Category: Ribokinase]]
+
<div style="clear:both"></div>
-
[[Category: Ribose]]
+
__TOC__
-
[[Category: Sad]]
+
</StructureSection>
-
[[Category: Structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Transferase]]
+
[[Category: Burley SK]]
 +
[[Category: Satyanarayana L]]
 +
[[Category: Swaminathan S]]

Current revision

Crystal structure of Ribokinase in Complex with ATP and glycerol in the active site from Klebsiella pneumoniae

PDB ID 3ikh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools