This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3i38

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:21, 6 April 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3i38| PDB=3i38 | SCENE= }}
 
-
===Structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578===
 
-
==About this Structure==
+
==Structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578==
-
[[3i38]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_mgh_78578 Klebsiella pneumoniae subsp. pneumoniae mgh 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I38 OCA].
+
<StructureSection load='3i38' size='340' side='right'caption='[[3i38]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
[[Category: Klebsiella pneumoniae subsp. pneumoniae mgh 78578]]
+
== Structural highlights ==
-
[[Category: Anderson, W F.]]
+
<table><tr><td colspan='2'>[[3i38]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Klep7 Klep7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I38 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I38 FirstGlance]. <br>
-
[[Category: Bearden, J.]]
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Filippova, E V.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cbpA, KPN78578_44400, KPN_04509 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272620 KLEP7])</td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i38 OCA], [https://pdbe.org/3i38 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i38 RCSB], [https://www.ebi.ac.uk/pdbsum/3i38 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i38 ProSAT], [https://www.topsan.org/Proteins/MCSG/3i38 TOPSAN]</span></td></tr>
-
[[Category: Kiryukhina, O.]]
+
</table>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
== Evolutionary Conservation ==
-
[[Category: Minasov, G.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Shuvalova, L.]]
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i3/3i38_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i38 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Klep7]]
 +
[[Category: Large Structures]]
 +
[[Category: Anderson, W F]]
 +
[[Category: Bearden, J]]
 +
[[Category: Filippova, E V]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kiryukhina, O]]
 +
[[Category: Structural genomic]]
 +
[[Category: Minasov, G]]
 +
[[Category: Shuvalova, L]]
[[Category: Chaperone]]
[[Category: Chaperone]]
[[Category: Dnaj]]
[[Category: Dnaj]]
[[Category: Klebsiella pneumoniae]]
[[Category: Klebsiella pneumoniae]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578

PDB ID 3i38

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools