3ifr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:59, 9 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ifr| PDB=3ifr | SCENE= }}
 
-
===The crystal structure of xylulose kinase from Rhodospirillum rubrum===
 
-
==About this Structure==
+
==The crystal structure of xylulose kinase from Rhodospirillum rubrum==
-
[[3ifr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IFR OCA].
+
<StructureSection load='3ifr' size='340' side='right'caption='[[3ifr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
[[Category: Rhodospirillum rubrum]]
+
== Structural highlights ==
-
[[Category: Xylulokinase]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IFR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IFR FirstGlance]. <br>
-
[[Category: Burley, S K.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: Swaminathan, S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ifr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ifr OCA], [https://pdbe.org/3ifr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ifr RCSB], [https://www.ebi.ac.uk/pdbsum/3ifr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ifr ProSAT]</span></td></tr>
-
[[Category: Zhang, Z.]]
+
</table>
-
[[Category: 11200h]]
+
== Evolutionary Conservation ==
-
[[Category: Kinase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: New york sgx research center for structural genomic]]
+
Check<jmol>
-
[[Category: Nysgxrc]]
+
<jmolCheckbox>
-
[[Category: Protein structure initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/if/3ifr_consurf.spt"</scriptWhenChecked>
-
[[Category: Psi-2]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Rhodospirillum rubrum]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Sgx]]
+
</jmolCheckbox>
-
[[Category: Structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ifr ConSurf].
-
[[Category: Transferase]]
+
<div style="clear:both"></div>
-
[[Category: Xylulose kinase]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Burley SK]]
 +
[[Category: Swaminathan S]]
 +
[[Category: Zhang Z]]

Current revision

The crystal structure of xylulose kinase from Rhodospirillum rubrum

PDB ID 3ifr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ifr"
Personal tools