1bhg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:21, 6 November 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_1bhg| PDB=1bhg | SCENE= }}
 
-
===HUMAN BETA-GLUCURONIDASE AT 2.6 A RESOLUTION===
 
-
{{ABSTRACT_PUBMED_8599764}}
 
-
==Disease==
+
==HUMAN BETA-GLUCURONIDASE AT 2.6 A RESOLUTION==
-
[[http://www.uniprot.org/uniprot/BGLR_HUMAN BGLR_HUMAN]] Defects in GUSB are the cause of mucopolysaccharidosis type 7 (MPS7) [MIM:[http://omim.org/entry/253220 253220]]; also known as Sly syndrome. MPS7 is an autosomal recessive lysosomal storage disease characterized by inability to degrade glucuronic acid-containing glycosaminoglycans. The phenotype is highly variable, ranging from severe lethal hydrops fetalis to mild forms with survival into adulthood. Most patients with the intermediate phenotype show hepatomegaly, skeletal anomalies, coarse facies, and variable degrees of mental impairment.<ref>PMID:8111412</ref><ref>PMID:8111413</ref><ref>PMID:1702266</ref><ref>PMID:7680524</ref><ref>PMID:8089138</ref><ref>PMID:7573038</ref><ref>PMID:7633414</ref><ref>PMID:8644704</ref><ref>PMID:8707294</ref><ref>PMID:9099834</ref><ref>PMID:9490302</ref><ref>PMID:12859417</ref><ref>PMID:12522561</ref> Note=Mucopolysaccharidosis type 7 is associated with non-immune hydrops fetalis, a generalized edema of the fetus with fluid accumulation in the body cavities due to non-immune causes. Non-immune hydrops fetalis is not a diagnosis in itself but a symptom, a feature of many genetic disorders, and the end-stage of a wide variety of disorders.
+
<StructureSection load='1bhg' size='340' side='right'caption='[[1bhg]], [[Resolution|resolution]] 2.53&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1bhg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BHG FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.53&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bhg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bhg OCA], [https://pdbe.org/1bhg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bhg RCSB], [https://www.ebi.ac.uk/pdbsum/1bhg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bhg ProSAT]</span></td></tr>
 +
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/BGLR_HUMAN BGLR_HUMAN] Defects in GUSB are the cause of mucopolysaccharidosis type 7 (MPS7) [MIM:[https://omim.org/entry/253220 253220]; also known as Sly syndrome. MPS7 is an autosomal recessive lysosomal storage disease characterized by inability to degrade glucuronic acid-containing glycosaminoglycans. The phenotype is highly variable, ranging from severe lethal hydrops fetalis to mild forms with survival into adulthood. Most patients with the intermediate phenotype show hepatomegaly, skeletal anomalies, coarse facies, and variable degrees of mental impairment.<ref>PMID:8111412</ref> <ref>PMID:8111413</ref> <ref>PMID:1702266</ref> <ref>PMID:7680524</ref> <ref>PMID:8089138</ref> <ref>PMID:7573038</ref> <ref>PMID:7633414</ref> <ref>PMID:8644704</ref> <ref>PMID:8707294</ref> <ref>PMID:9099834</ref> <ref>PMID:9490302</ref> <ref>PMID:12859417</ref> <ref>PMID:12522561</ref> Note=Mucopolysaccharidosis type 7 is associated with non-immune hydrops fetalis, a generalized edema of the fetus with fluid accumulation in the body cavities due to non-immune causes. Non-immune hydrops fetalis is not a diagnosis in itself but a symptom, a feature of many genetic disorders, and the end-stage of a wide variety of disorders.
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BGLR_HUMAN BGLR_HUMAN] Plays an important role in the degradation of dermatan and keratan sulfates.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bh/1bhg_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bhg ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The X-ray structure of the homotetrameric lysosomal acid hydrolase, human beta-glucuronidase (332,000 Mr), has been determined at 2.6 A resolution. The tetramer has approximate dihedral symmetry and each promoter consists of three structural domains with topologies similar to a jelly roll barrel, an immunoglobulin constant domain and a TIM barrel respectively. Residues 179-204 form a beta-hairpin motif similar to the putative lysosomal targeting motif of cathepsin D, supporting the view that lysosomal targeting has a structural basis. The active site of the enzyme is formed from a large cleft at the interface of two monomers. Residues Glu 451 and Glu 540 are proposed to be important for catalysis. The structure establishes a framework for understanding mutations that lead to the human genetic disease mucopolysaccharidosis VII, and for using the enzyme in anti-cancer therapy.
-
==Function==
+
Structure of human beta-glucuronidase reveals candidate lysosomal targeting and active-site motifs.,Jain S, Drendel WB, Chen ZW, Mathews FS, Sly WS, Grubb JH Nat Struct Biol. 1996 Apr;3(4):375-81. PMID:8599764<ref>PMID:8599764</ref>
-
[[http://www.uniprot.org/uniprot/BGLR_HUMAN BGLR_HUMAN]] Plays an important role in the degradation of dermatan and keratan sulfates.
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[1bhg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BHG OCA].
+
</div>
 +
<div class="pdbe-citations 1bhg" style="background-color:#fffaf0;"></div>
-
==Reference==
+
==See Also==
-
<ref group="xtra">PMID:008599764</ref><references group="xtra"/><references/>
+
*[[Glucuronisidase 3D structures|Glucuronisidase 3D structures]]
-
[[Category: Beta-glucuronidase]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Drendel, W B.]]
+
[[Category: Large Structures]]
-
[[Category: Jain, S.]]
+
[[Category: Drendel WB]]
-
[[Category: Acid hydrolase]]
+
[[Category: Jain S]]
-
[[Category: Glycosidase]]
+
-
[[Category: Lysosomal enzyme]]
+

Current revision

HUMAN BETA-GLUCURONIDASE AT 2.6 A RESOLUTION

PDB ID 1bhg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools