1jr2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:41, 7 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_1jr2| PDB=1jr2 | SCENE= }}
 
-
===Structure of Uroporphyrinogen III Synthase===
 
-
{{ABSTRACT_PUBMED_11689424}}
 
-
==Disease==
+
==Structure of Uroporphyrinogen III Synthase==
-
[[http://www.uniprot.org/uniprot/HEM4_HUMAN HEM4_HUMAN]] Defects in UROS are the cause of congenital erythropoietic porphyria (CEP) [MIM:[http://omim.org/entry/263700 263700]]; also known as Gunther disease. Porphyrias are inherited defects in the biosynthesis of heme, resulting in the accumulation and increased excretion of porphyrins or porphyrin precursors. They are classified as erythropoietic or hepatic, depending on whether the enzyme deficiency occurs in red blood cells or in the liver. The manifestations of CEP are heterogeneous, ranging from nonimmune hydrops fetalis due to severe hemolytic anemia in utero to milder, later onset forms, which have only skin lesions due to cutaneous photosensitivity in adult life. The deficiency in UROS activity results in the non-enzymatic conversion of hydroxymethylbilane (HMB) into the uroporphyrinogen-I isomer.<ref>PMID:2331520</ref><ref>PMID:1733834</ref><ref>PMID:1737856</ref><ref>PMID:7860775</ref><ref>PMID:8655129</ref><ref>PMID:9188670</ref><ref>PMID:9834209</ref><ref>PMID:9803266</ref><ref>PMID:11121156</ref><ref>PMID:12060141</ref><ref>PMID:15304101</ref><ref>PMID:21653323</ref><ref>PMID:22350154</ref> Note=Severe congenital erythropoietic porphyria is associated with non-immune hydrops fetalis, a generalized edema of the fetus with fluid accumulation in the body cavities due to non-immune causes. Non-immune hydrops fetalis is not a diagnosis in itself but a symptom, a feature of many genetic disorders, and the end-stage of a wide variety of disorders.
+
<StructureSection load='1jr2' size='340' side='right'caption='[[1jr2]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Function==
+
<table><tr><td colspan='2'>[[1jr2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JR2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JR2 FirstGlance]. <br>
-
[[http://www.uniprot.org/uniprot/HEM4_HUMAN HEM4_HUMAN]] Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III, the branch point for the various sub-pathways leading to the wide diversity of porphyrins. Porphyrins act as cofactors for a multitude of enzymes that perform a variety of processes within the cell such as methionine synthesis (vitamin B12) or oxygen transport (heme).
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jr2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jr2 OCA], [https://pdbe.org/1jr2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jr2 RCSB], [https://www.ebi.ac.uk/pdbsum/1jr2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jr2 ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[1jr2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JR2 OCA].
+
== Disease ==
-
 
+
[https://www.uniprot.org/uniprot/HEM4_HUMAN HEM4_HUMAN] Defects in UROS are the cause of congenital erythropoietic porphyria (CEP) [MIM:[https://omim.org/entry/263700 263700]; also known as Gunther disease. Porphyrias are inherited defects in the biosynthesis of heme, resulting in the accumulation and increased excretion of porphyrins or porphyrin precursors. They are classified as erythropoietic or hepatic, depending on whether the enzyme deficiency occurs in red blood cells or in the liver. The manifestations of CEP are heterogeneous, ranging from nonimmune hydrops fetalis due to severe hemolytic anemia in utero to milder, later onset forms, which have only skin lesions due to cutaneous photosensitivity in adult life. The deficiency in UROS activity results in the non-enzymatic conversion of hydroxymethylbilane (HMB) into the uroporphyrinogen-I isomer.<ref>PMID:2331520</ref> <ref>PMID:1733834</ref> <ref>PMID:1737856</ref> <ref>PMID:7860775</ref> <ref>PMID:8655129</ref> <ref>PMID:9188670</ref> <ref>PMID:9834209</ref> <ref>PMID:9803266</ref> <ref>PMID:11121156</ref> <ref>PMID:12060141</ref> <ref>PMID:15304101</ref> <ref>PMID:21653323</ref> <ref>PMID:22350154</ref> Note=Severe congenital erythropoietic porphyria is associated with non-immune hydrops fetalis, a generalized edema of the fetus with fluid accumulation in the body cavities due to non-immune causes. Non-immune hydrops fetalis is not a diagnosis in itself but a symptom, a feature of many genetic disorders, and the end-stage of a wide variety of disorders.
-
==Reference==
+
== Function ==
-
<ref group="xtra">PMID:011689424</ref><references group="xtra"/><references/>
+
[https://www.uniprot.org/uniprot/HEM4_HUMAN HEM4_HUMAN] Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III, the branch point for the various sub-pathways leading to the wide diversity of porphyrins. Porphyrins act as cofactors for a multitude of enzymes that perform a variety of processes within the cell such as methionine synthesis (vitamin B12) or oxygen transport (heme).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/1jr2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jr2 ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Uroporphyrinogen-III synthase]]
+
[[Category: Large Structures]]
-
[[Category: Alexander, K J.]]
+
[[Category: Alexander KJ]]
-
[[Category: Bergonia, H A.]]
+
[[Category: Bergonia HA]]
-
[[Category: Hill, C P.]]
+
[[Category: Hill CP]]
-
[[Category: Mathews, M A.]]
+
[[Category: Mathews MA]]
-
[[Category: Phillips, J D.]]
+
[[Category: Phillips JD]]
-
[[Category: Schadick, K.]]
+
[[Category: Schadick K]]
-
[[Category: Schubert, H L.]]
+
[[Category: Schubert HL]]
-
[[Category: Whitby, F G.]]
+
[[Category: Whitby FG]]
-
[[Category: Heam biosynthesis]]
+
-
[[Category: Heme biosynthesis]]
+
-
[[Category: Lyase]]
+

Current revision

Structure of Uroporphyrinogen III Synthase

PDB ID 1jr2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools