This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2cu0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:20, 25 October 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cu0.gif|left|200px]]<br /><applet load="2cu0" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2cu0, resolution 2.10&Aring;" />
 
-
'''Crystal structure of inosine-5'-monophosphate dehydrogenase from Pyrococcus horikoshii OT3'''<br />
 
-
==About this Structure==
+
==Crystal structure of inosine-5'-monophosphate dehydrogenase from Pyrococcus horikoshii OT3==
-
2CU0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with <scene name='pdbligand=XMP:'>XMP</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/IMP_dehydrogenase IMP dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.205 1.1.1.205] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CU0 OCA].
+
<StructureSection load='2cu0' size='340' side='right'caption='[[2cu0]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
[[Category: IMP dehydrogenase]]
+
== Structural highlights ==
-
[[Category: Pyrococcus horikoshii]]
+
<table><tr><td colspan='2'>[[2cu0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CU0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CU0 FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
[[Category: Asada, Y.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=XMP:XANTHOSINE-5-MONOPHOSPHATE'>XMP</scene></td></tr>
-
[[Category: Kunishima, N.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cu0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cu0 OCA], [https://pdbe.org/2cu0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cu0 RCSB], [https://www.ebi.ac.uk/pdbsum/2cu0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cu0 ProSAT], [https://www.topsan.org/Proteins/RSGI/2cu0 TOPSAN]</span></td></tr>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</table>
-
[[Category: XMP]]
+
== Function ==
-
[[Category: inosine-5'-monophosphate dehydrogenase]]
+
[https://www.uniprot.org/uniprot/IMDH_PYRHO IMDH_PYRHO] Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth (By similarity).
-
[[Category: national project on protein structural and functional analyses]]
+
== Evolutionary Conservation ==
-
[[Category: nppsfa]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: pyrococcus horikoshii ot3]]
+
Check<jmol>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<jmolCheckbox>
-
[[Category: rsgi]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cu/2cu0_consurf.spt"</scriptWhenChecked>
-
[[Category: structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cu0 ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:52:23 2008''
+
==See Also==
 +
*[[Inosine monophosphate dehydrogenase 3D structures|Inosine monophosphate dehydrogenase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pyrococcus horikoshii]]
 +
[[Category: Asada Y]]
 +
[[Category: Kunishima N]]

Current revision

Crystal structure of inosine-5'-monophosphate dehydrogenase from Pyrococcus horikoshii OT3

PDB ID 2cu0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools