This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2cwl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:44, 13 March 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cwl.gif|left|200px]]<br /><applet load="2cwl" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2cwl, resolution 1.65&Aring;" />
 
-
'''Crystal structure of manganese-free form of pseudocatalase from Thermus thermophilus HB8'''<br />
 
-
==About this Structure==
+
==Crystal structure of manganese-free form of pseudocatalase from Thermus thermophilus HB8==
-
2CWL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Active as [http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWL OCA].
+
<StructureSection load='2cwl' size='340' side='right'caption='[[2cwl]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
[[Category: Catalase]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2cwl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CWL FirstGlance]. <br>
-
[[Category: Thermus thermophilus]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
[[Category: Ebihara, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cwl OCA], [https://pdbe.org/2cwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cwl RCSB], [https://www.ebi.ac.uk/pdbsum/2cwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cwl ProSAT], [https://www.topsan.org/Proteins/RSGI/2cwl TOPSAN]</span></td></tr>
-
[[Category: Kuramitsu, S.]]
+
</table>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
== Function ==
-
[[Category: Yokoyama, S.]]
+
[https://www.uniprot.org/uniprot/Q5SM21_THET8 Q5SM21_THET8]
-
[[Category: national project on protein structural and functional analyses]]
+
== Evolutionary Conservation ==
-
[[Category: nppsfa]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: oxidoreductase]]
+
Check<jmol>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<jmolCheckbox>
-
[[Category: rsgi]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/2cwl_consurf.spt"</scriptWhenChecked>
-
[[Category: structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cwl ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:53:06 2008''
+
==See Also==
 +
*[[Catalase 3D structures|Catalase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB8]]
 +
[[Category: Ebihara A]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal structure of manganese-free form of pseudocatalase from Thermus thermophilus HB8

PDB ID 2cwl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools