This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2cz6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:32, 22 May 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cz6.gif|left|200px]]<br /><applet load="2cz6" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2cz6, resolution 1.50&Aring;" />
 
-
'''Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide'''<br />
 
-
==About this Structure==
+
==Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide==
-
2CZ6 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis] with <scene name='pdbligand=FE:'>FE</scene>, <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=NO:'>NO</scene> and <scene name='pdbligand=CYI:'>CYI</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZ6 OCA].
+
<StructureSection load='2cz6' size='340' side='right'caption='[[2cz6]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
[[Category: Nitrile hydratase]]
+
== Structural highlights ==
-
[[Category: Protein complex]]
+
<table><tr><td colspan='2'>[[2cz6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CZ6 FirstGlance]. <br>
-
[[Category: Rhodococcus erythropolis]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
[[Category: Hashimoto, K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=CYI:CYCLOHEXYL+ISOCYANIDE'>CYI</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
-
[[Category: Kamiya, N.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cz6 OCA], [https://pdbe.org/2cz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cz6 RCSB], [https://www.ebi.ac.uk/pdbsum/2cz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cz6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2cz6 TOPSAN]</span></td></tr>
-
[[Category: Kawano, Y.]]
+
</table>
-
[[Category: Nojiri, M.]]
+
== Function ==
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[https://www.uniprot.org/uniprot/NHAA_RHOER NHAA_RHOER] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides. Industrial production of acrylamide is now being developed using some of the enzymes of this class.
-
[[Category: CYI]]
+
== Evolutionary Conservation ==
-
[[Category: FE]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: MG]]
+
Check<jmol>
-
[[Category: NO]]
+
<jmolCheckbox>
-
[[Category: complex]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cz/2cz6_consurf.spt"</scriptWhenChecked>
-
[[Category: cysteine-sulfenic acid]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: cysteine-sulfinic acid]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: hydration]]
+
</jmolCheckbox>
-
[[Category: national project on protein structural and functional analyses]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cz6 ConSurf].
-
[[Category: nitrile]]
+
<div style="clear:both"></div>
-
[[Category: nppsfa]]
+
-
[[Category: photo-reactive]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomics]]
+
-
[[Category: substrate analogue]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:53:52 2008''
+
==See Also==
 +
*[[Nitrile hydratase|Nitrile hydratase]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Rhodococcus erythropolis]]
 +
[[Category: Hashimoto K]]
 +
[[Category: Kamiya N]]
 +
[[Category: Kawano Y]]
 +
[[Category: Nojiri M]]

Current revision

Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide

PDB ID 2cz6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools