2d7y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:34, 22 May 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2d7y.gif|left|200px]]<br /><applet load="2d7y" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2d7y, resolution 2.66&Aring;" />
 
-
'''Aspartate Aminotransferase Mutant MA'''<br />
 
-
==About this Structure==
+
==Aspartate Aminotransferase Mutant MA==
-
2D7Y is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=PLP:'>PLP</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7Y OCA].
+
<StructureSection load='2d7y' size='340' side='right'caption='[[2d7y]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
-
[[Category: Aspartate transaminase]]
+
== Structural highlights ==
-
[[Category: Escherichia coli]]
+
<table><tr><td colspan='2'>[[2d7y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D7Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D7Y FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.66&#8491;</td></tr>
-
[[Category: Kuramitsu, S.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-
[[Category: Masui, R.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d7y OCA], [https://pdbe.org/2d7y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d7y RCSB], [https://www.ebi.ac.uk/pdbsum/2d7y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d7y ProSAT]</span></td></tr>
-
[[Category: Nakagawa, N.]]
+
</table>
-
[[Category: Tada, H.]]
+
== Function ==
-
[[Category: Tanaka, Y.]]
+
[https://www.uniprot.org/uniprot/AAT_ECOLI AAT_ECOLI]
-
[[Category: Yano, T.]]
+
== Evolutionary Conservation ==
-
[[Category: PLP]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: aspartate aminotransferase]]
+
Check<jmol>
-
[[Category: directed evolution]]
+
<jmolCheckbox>
-
[[Category: protein design]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/2d7y_consurf.spt"</scriptWhenChecked>
-
[[Category: protein enginnering]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d7y ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:56:03 2008''
+
==See Also==
 +
*[[Aspartate aminotransferase 3D structures|Aspartate aminotransferase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Escherichia coli]]
 +
[[Category: Large Structures]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Masui R]]
 +
[[Category: Nakagawa N]]
 +
[[Category: Tada H]]
 +
[[Category: Tanaka Y]]
 +
[[Category: Yano T]]

Current revision

Aspartate Aminotransferase Mutant MA

PDB ID 2d7y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools