2dd6

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[[Image:2dd6.gif|left|200px]]<br /><applet load="2dd6" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2dd6" />
 
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'''Solution structure of Dermaseptin antimicrobial peptide truncated, mutated analog, K4-S4(1-13)a'''<br />
 
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==Overview==
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==Solution structure of Dermaseptin antimicrobial peptide truncated, mutated analog, K4-S4(1-13)a==
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<StructureSection load='2dd6' size='340' side='right'caption='[[2dd6]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2dd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phyllomedusa_sauvagii Phyllomedusa sauvagii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DD6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 15 models</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dd6 OCA], [https://pdbe.org/2dd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dd6 RCSB], [https://www.ebi.ac.uk/pdbsum/2dd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dd6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DRS4_PHYSA DRS4_PHYSA] Potent antimicrobial peptide with activity against bacteria and protozoa (By similarity). Also has activity against fungi (PubMed:8306981). Also shows activity against enveloped herpes simplex virus type 1 (PubMed:11782932). Probably acts by disturbing membrane functions with its amphipathic structure (Probable). Binds to healthy erythrocytes (this binding is receptor independent), and has strong hemolytic activity (PubMed:9395500). Does not bind to P.falciparum infected erythrocytes, but accumulates within the parasite (PubMed:9395500). Kills the parasite, and only at high concentrations has a hemolytic activity on the host cell (PubMed:9395500). In vitro, shows high spermicidal activities (PubMed:16307969).[UniProtKB:P24302]<ref>PMID:11782932</ref> <ref>PMID:16307969</ref> <ref>PMID:8306981</ref> <ref>PMID:9395500</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
Acyl conjugation to antimicrobial peptides is known to enhance antimicrobial properties. Here, we investigated the consequences of aminolauryl (NC(12)) conjugation to the dermaseptin derivative K(4)-S4-(1-13) (P) on binding properties to bilayer models mimicking bacterial plasma membrane, which is often cited as the ultimate site of action. Isothermal titration calorimetry revealed that acylation was responsible for enhancing the binding affinity of NC(12)-P compared with P (K = 13 x 10(5) and 1.5 x 10(5) m(-1), respectively). Surface plasmon resonance measurements confirmed the isothermal titration calorimetry results (K(app) = 12.6 x 10(5) and 1.53 x 10(5) m(-1), respectively) and further indicated that enhanced adhesion affinity (K(adhesion) = 3 x 10(5) and 1 x 10(5) m(-1), respectively) was coupled to enhanced tendency to insert within the bilayer (K(insertion) = 4.5 and 1.5, respectively). To gain insight into the molecular basis for these observations, we investigated the three-dimensional structures in the presence of dodecylphosphocholine using NMR. The ensemble of NMR-calculated structures (backbone root mean square deviation &lt;0.6 A) showed that the acyl moiety was responsible for a significant molecular reorganization, possibly affecting the electrostatic potential distribution in NC(12)-P relative to that of P. The combined data present compelling evidence in support of the hypothesis that N-acylation affects antimicrobial properties by modifying the secondary structure of the peptide in a manner that facilitates contact with the membrane and consequently increases its disruption.
Acyl conjugation to antimicrobial peptides is known to enhance antimicrobial properties. Here, we investigated the consequences of aminolauryl (NC(12)) conjugation to the dermaseptin derivative K(4)-S4-(1-13) (P) on binding properties to bilayer models mimicking bacterial plasma membrane, which is often cited as the ultimate site of action. Isothermal titration calorimetry revealed that acylation was responsible for enhancing the binding affinity of NC(12)-P compared with P (K = 13 x 10(5) and 1.5 x 10(5) m(-1), respectively). Surface plasmon resonance measurements confirmed the isothermal titration calorimetry results (K(app) = 12.6 x 10(5) and 1.53 x 10(5) m(-1), respectively) and further indicated that enhanced adhesion affinity (K(adhesion) = 3 x 10(5) and 1 x 10(5) m(-1), respectively) was coupled to enhanced tendency to insert within the bilayer (K(insertion) = 4.5 and 1.5, respectively). To gain insight into the molecular basis for these observations, we investigated the three-dimensional structures in the presence of dodecylphosphocholine using NMR. The ensemble of NMR-calculated structures (backbone root mean square deviation &lt;0.6 A) showed that the acyl moiety was responsible for a significant molecular reorganization, possibly affecting the electrostatic potential distribution in NC(12)-P relative to that of P. The combined data present compelling evidence in support of the hypothesis that N-acylation affects antimicrobial properties by modifying the secondary structure of the peptide in a manner that facilitates contact with the membrane and consequently increases its disruption.
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==About this Structure==
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Consequences of N-acylation on structure and membrane binding properties of dermaseptin derivative K4-S4-(1-13).,Shalev DE, Rotem S, Fish A, Mor A J Biol Chem. 2006 Apr 7;281(14):9432-8. Epub 2005 Dec 30. PMID:16407175<ref>PMID:16407175</ref>
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2DD6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/ ] with <scene name='pdbligand=NH2:'>NH2</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD6 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Consequences of N-acylation on structure and membrane binding properties of dermaseptin derivative K4-S4-(1-13)., Shalev DE, Rotem S, Fish A, Mor A, J Biol Chem. 2006 Apr 7;281(14):9432-8. Epub 2005 Dec 30. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16407175 16407175]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 2dd6" style="background-color:#fffaf0;"></div>
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[[Category: Fish, A.]]
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== References ==
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[[Category: Mor, A.]]
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<references/>
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[[Category: Rotem, S.]]
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__TOC__
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[[Category: Shalev, D E.]]
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</StructureSection>
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[[Category: NH2]]
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[[Category: Large Structures]]
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[[Category: alpha helix]]
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[[Category: Phyllomedusa sauvagii]]
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[[Category: peptide]]
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[[Category: Fish A]]
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[[Category: Mor A]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:57:38 2008''
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[[Category: Rotem S]]
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[[Category: Shalev DE]]

Current revision

Solution structure of Dermaseptin antimicrobial peptide truncated, mutated analog, K4-S4(1-13)a

PDB ID 2dd6

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