2dgj

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[[Image:2dgj.jpg|left|200px]]<br /><applet load="2dgj" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2dgj, resolution 2.35&Aring;" />
 
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'''Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus'''<br />
 
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==About this Structure==
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==Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus==
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2DGJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=GOL:'>GOL</scene> and <scene name='pdbligand=ACY:'>ACY</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGJ OCA].
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<StructureSection load='2dgj' size='340' side='right'caption='[[2dgj]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
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[[Category: Single protein]]
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== Structural highlights ==
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[[Category: Staphylococcus aureus]]
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<table><tr><td colspan='2'>[[2dgj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DGJ FirstGlance]. <br>
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[[Category: Kuroda, M.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
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[[Category: Ohta, T.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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[[Category: Tanaka, I.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dgj OCA], [https://pdbe.org/2dgj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dgj RCSB], [https://www.ebi.ac.uk/pdbsum/2dgj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dgj ProSAT]</span></td></tr>
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[[Category: Tanaka, Y.]]
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</table>
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[[Category: Watanabe, N.]]
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== Function ==
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[[Category: Yao, M.]]
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[https://www.uniprot.org/uniprot/EBHA_STAAM EBHA_STAAM]
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[[Category: ACY]]
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== Evolutionary Conservation ==
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[[Category: GOL]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: SO4]]
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Check<jmol>
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[[Category: adhesin]]
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<jmolCheckbox>
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[[Category: helix-bundle]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/2dgj_consurf.spt"</scriptWhenChecked>
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[[Category: rod-like structure]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dgj ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The 1.1 MDa cell-wall-associated adhesion protein of staphylococci, Ebh, consists of several distinct regions, including a large central region with 52 imperfect repeats of 126 amino acid residues. We investigated the structure of this giant molecule by X-ray crystallography, circular dichroism (CD) spectrometry, and small-angle X-ray scattering (SAXS). The crystal structure of two repeats showed that each repeat consists of two distinct three-helix bundles, and two such repeats are connected along the long axis, resulting in a rod-like structure that is 120 A in length. CD and SAXS analyses of the samples with longer repeats suggested that each repeat has an identical structure, and that such repeats are connected tandemly to form a rod-like structure in solution, the length of which increased proportionately with the number of repeating units. On the basis of these results, it was proposed that Ebh is a 320 nm rod-like molecule with some plasticity at module junctions.
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:58:33 2008''
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A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus.,Tanaka Y, Sakamoto S, Kuroda M, Goda S, Gao YG, Tsumoto K, Hiragi Y, Yao M, Watanabe N, Ohta T, Tanaka I Structure. 2008 Mar;16(3):488-96. PMID:18334223<ref>PMID:18334223</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2dgj" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Staphylococcus aureus]]
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[[Category: Kuroda M]]
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[[Category: Ohta T]]
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[[Category: Tanaka I]]
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[[Category: Tanaka Y]]
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[[Category: Watanabe N]]
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[[Category: Yao M]]

Current revision

Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus

PDB ID 2dgj

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