This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2djv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:42, 29 May 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2djv.gif|left|200px]]<br /><applet load="2djv" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2djv" />
 
-
'''Solution structures of the WHEP-TRS domain of human methionyl-tRNA synthetase'''<br />
 
-
==About this Structure==
+
==Solution structures of the WHEP-TRS domain of human methionyl-tRNA synthetase==
-
2DJV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Active as [http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJV OCA].
+
<StructureSection load='2djv' size='340' side='right'caption='[[2djv]]' scene=''>
-
[[Category: Homo sapiens]]
+
== Structural highlights ==
-
[[Category: Methionine--tRNA ligase]]
+
<table><tr><td colspan='2'>[[2djv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DJV FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
[[Category: Inoue, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2djv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2djv OCA], [https://pdbe.org/2djv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2djv RCSB], [https://www.ebi.ac.uk/pdbsum/2djv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2djv ProSAT], [https://www.topsan.org/Proteins/RSGI/2djv TOPSAN]</span></td></tr>
-
[[Category: Kigawa, T.]]
+
</table>
-
[[Category: Koshiba, S.]]
+
== Function ==
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[https://www.uniprot.org/uniprot/SYMC_HUMAN SYMC_HUMAN]
-
[[Category: Sasagawa, A.]]
+
== Evolutionary Conservation ==
-
[[Category: Sato, M.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Tochio, N.]]
+
Check<jmol>
-
[[Category: Yokoyama, S.]]
+
<jmolCheckbox>
-
[[Category: ec 6 1.1 10]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/2djv_consurf.spt"</scriptWhenChecked>
-
[[Category: national project on protein structural and functional analyses]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: nppsfa]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: riken structural genomics/proteomics initiative]]
+
</jmolCheckbox>
-
[[Category: rsgi]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2djv ConSurf].
-
[[Category: structural genomics]]
+
<div style="clear:both"></div>
-
[[Category: whep-trs domain]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:59:29 2008''
+
==See Also==
 +
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Inoue M]]
 +
[[Category: Kigawa T]]
 +
[[Category: Koshiba S]]
 +
[[Category: Sasagawa A]]
 +
[[Category: Sato M]]
 +
[[Category: Tochio N]]
 +
[[Category: Yokoyama S]]

Current revision

Solution structures of the WHEP-TRS domain of human methionyl-tRNA synthetase

PDB ID 2djv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools