This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3jvd
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3jvd| PDB=3jvd | SCENE= }} | ||
| - | ===Crystal structure of putative transcription regulation repressor (LACI family) FROM Corynebacterium glutamicum=== | ||
| - | == | + | ==Crystal structure of putative transcription regulation repressor (LACI family) FROM Corynebacterium glutamicum== |
| - | [[3jvd]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3jvd' size='340' side='right'caption='[[3jvd]], [[Resolution|resolution]] 2.30Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3jvd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JVD FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jvd OCA], [https://pdbe.org/3jvd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jvd RCSB], [https://www.ebi.ac.uk/pdbsum/3jvd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jvd ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q8NNY3_CORGL Q8NNY3_CORGL] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jv/3jvd_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jvd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Corynebacterium glutamicum]] | [[Category: Corynebacterium glutamicum]] | ||
| - | [[Category: Almo | + | [[Category: Large Structures]] |
| - | [[Category: Burley | + | [[Category: Almo SC]] |
| - | [[Category: Do | + | [[Category: Burley SK]] |
| - | [[Category: Foti | + | [[Category: Do J]] |
| - | [[Category: Freeman | + | [[Category: Foti R]] |
| - | + | [[Category: Freeman J]] | |
| - | [[Category: Patskovsky | + | [[Category: Patskovsky Y]] |
| - | [[Category: Ramagopal | + | [[Category: Ramagopal U]] |
| - | [[Category: Sauder | + | [[Category: Sauder JM]] |
| - | [[Category: Toro | + | [[Category: Toro R]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of putative transcription regulation repressor (LACI family) FROM Corynebacterium glutamicum
| |||||||||||
Categories: Corynebacterium glutamicum | Large Structures | Almo SC | Burley SK | Do J | Foti R | Freeman J | Patskovsky Y | Ramagopal U | Sauder JM | Toro R

