This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ira

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ira" [edit=sysop:move=sysop])
Current revision (03:39, 21 April 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ira| PDB=3ira | SCENE= }}
 
-
===The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1===
 
-
==About this Structure==
+
==The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1==
-
[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA].
+
<StructureSection load='3ira' size='340' side='right'caption='[[3ira]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
[[Category: Methanosarcina mazei]]
+
== Structural highlights ==
-
[[Category: Joachimiak, A.]]
+
<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Metma Metma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IRA FirstGlance]. <br>
-
[[Category: Keigher, L.]]
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192952 METMA])</td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [https://pdbe.org/3ira PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [https://www.ebi.ac.uk/pdbsum/3ira PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ira ProSAT]</span></td></tr>
-
[[Category: Wu, R.]]
+
</table>
-
[[Category: Zhang, R.]]
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ira_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ira ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Metma]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Keigher, L]]
 +
[[Category: Structural genomic]]
 +
[[Category: Wu, R]]
 +
[[Category: Zhang, R]]
[[Category: Conserved protein]]
[[Category: Conserved protein]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Methanosarcina mazei]]
[[Category: Methanosarcina mazei]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1

PDB ID 3ira

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools