This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3is5
From Proteopedia
(Difference between revisions)
m (Protected "3is5" [edit=sysop:move=sysop]) |
|||
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3is5| PDB=3is5 | SCENE= }} | ||
| - | ===Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720=== | ||
| - | == | + | ==Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720== |
| - | [[3is5]] is a 6 chain structure with sequence from [ | + | <StructureSection load='3is5' size='340' side='right'caption='[[3is5]], [[Resolution|resolution]] 2.55Å' scene=''> |
| - | + | == Structural highlights == | |
| - | [[ | + | <table><tr><td colspan='2'>[[3is5]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii_ME49 Toxoplasma gondii ME49]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IS5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IS5 FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55Å</td></tr> |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3is5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3is5 OCA], [https://pdbe.org/3is5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3is5 RCSB], [https://www.ebi.ac.uk/pdbsum/3is5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3is5 ProSAT]</span></td></tr> |
| - | [ | + | </table> |
| - | [ | + | == Evolutionary Conservation == |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/is/3is5_consurf.spt"</scriptWhenChecked> |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3is5 ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: | + | |
| - | [[Category: | + | ==See Also== |
| - | [[Category: | + | *[[Calcium-dependent protein kinase|Calcium-dependent protein kinase]] |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Toxoplasma gondii ME49]] |
| - | [[Category: | + | [[Category: Arrowsmith CH]] |
| - | [[Category: | + | [[Category: Artz JD]] |
| - | [[Category: | + | [[Category: Bochkarev A]] |
| - | [[Category: | + | [[Category: Bountra C]] |
| - | [[Category: | + | [[Category: Cossar D]] |
| + | [[Category: Edwards AM]] | ||
| + | [[Category: Hui R]] | ||
| + | [[Category: Hutchinson A]] | ||
| + | [[Category: Kozieradzki I]] | ||
| + | [[Category: Lin YH]] | ||
| + | [[Category: MacKenzie F]] | ||
| + | [[Category: Senisterra G]] | ||
| + | [[Category: Weigelt J]] | ||
| + | [[Category: Wernimont AK]] | ||
Current revision
Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720
| |||||||||||
Categories: Large Structures | Toxoplasma gondii ME49 | Arrowsmith CH | Artz JD | Bochkarev A | Bountra C | Cossar D | Edwards AM | Hui R | Hutchinson A | Kozieradzki I | Lin YH | MacKenzie F | Senisterra G | Weigelt J | Wernimont AK

