4j2g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (03:04, 21 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_4j2g| PDB=4j2g | SCENE= }}
 
-
===Atg13 HORMA domain===
 
-
{{ABSTRACT_PUBMED_23509291}}
 
-
==About this Structure==
+
==Atg13 HORMA domain==
-
[[4j2g]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lachancea_thermotolerans_cbs_6340 Lachancea thermotolerans cbs 6340]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J2G OCA].
+
<StructureSection load='4j2g' size='340' side='right'caption='[[4j2g]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
-
[[Category: Lachancea thermotolerans cbs 6340]]
+
== Structural highlights ==
-
[[Category: Jao, C.]]
+
<table><tr><td colspan='2'>[[4j2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachancea_thermotolerans_CBS_6340 Lachancea thermotolerans CBS 6340]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4J2G FirstGlance]. <br>
-
[[Category: Atg13]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29&#8491;</td></tr>
-
[[Category: Autophagy]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Horma]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4j2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4j2g OCA], [https://pdbe.org/4j2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4j2g RCSB], [https://www.ebi.ac.uk/pdbsum/4j2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4j2g ProSAT]</span></td></tr>
-
[[Category: Unknown function]]
+
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Autophagy-related 13 (Atg13) is a key early-acting factor in autophagy and the major locus for nutrient-dependent regulation of autophagy by Tor. The 2.3-A resolution crystal structure of the N-terminal domain of Atg13 reveals a previously unidentified HORMA (Hop1p, Rev1p and Mad2) domain similar to that of the spindle checkpoint protein Mad2. Mad2 has two different stable conformations, O-Mad2 and C-Mad2, and the Atg13 HORMA structure corresponds to the C-Mad2 state. The Atg13 HORMA domain is required for autophagy and for recruitment of the phosphatidylinositol (PI) 3-kinase subunit Atg14 but is not required for Atg1 interaction or Atg13 recruitment to the preautophagosomal structure. The Atg13 HORMA structure reveals a pair of conserved Arg residues that constitute a putative phosphate sensor. One of the Arg residues is in the region corresponding to the "safety belt" conformational switch of Mad2, suggesting conformational regulation of phosphate binding. These two Arg residues are essential for autophagy, suggesting that the Atg13 HORMA domain could function as a phosphoregulated conformational switch.
 +
 
 +
A HORMA domain in Atg13 mediates PI 3-kinase recruitment in autophagy.,Jao CC, Ragusa MJ, Stanley RE, Hurley JH Proc Natl Acad Sci U S A. 2013 Mar 18. PMID:23509291<ref>PMID:23509291</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4j2g" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Lachancea thermotolerans CBS 6340]]
 +
[[Category: Large Structures]]
 +
[[Category: Hurley JH]]
 +
[[Category: Jao C]]
 +
[[Category: Ragusa MJ]]
 +
[[Category: Stanley RE]]

Current revision

Atg13 HORMA domain

PDB ID 4j2g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools