This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4jdb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:22, 8 November 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4jdb is ON HOLD until Paper Publication
+
==Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-005==
 +
<StructureSection load='4jdb' size='340' side='right'caption='[[4jdb]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4jdb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_cruzi_strain_CL_Brener Trypanosoma cruzi strain CL Brener]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JDB FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=JDB:5-[2-(7-METHOXYNAPHTHALEN-2-YL)ETHYL]-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC+ACID'>JDB</scene>, <scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jdb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jdb OCA], [https://pdbe.org/4jdb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jdb RCSB], [https://www.ebi.ac.uk/pdbsum/4jdb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jdb ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PYRD_TRYCC PYRD_TRYCC] Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor. Molecular oxygen can replace fumarate in vitro.
-
Authors: Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Hashimoto, S., Matsuoka, S., Kuranaga, T., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
+
==See Also==
-
 
+
*[[Dihydroorotate dehydrogenase 3D structures|Dihydroorotate dehydrogenase 3D structures]]
-
Description: Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-005
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Trypanosoma cruzi strain CL Brener]]
 +
[[Category: Aoki T]]
 +
[[Category: Balogun EO]]
 +
[[Category: Harada S]]
 +
[[Category: Hashimoto S]]
 +
[[Category: Honma T]]
 +
[[Category: Iida M]]
 +
[[Category: Inaoka DK]]
 +
[[Category: Inoue M]]
 +
[[Category: Kita K]]
 +
[[Category: Kuranaga T]]
 +
[[Category: Lee N]]
 +
[[Category: Matsuoka S]]
 +
[[Category: Nara T]]
 +
[[Category: Sakamoto K]]
 +
[[Category: Shiba T]]
 +
[[Category: Suzuki S]]
 +
[[Category: Tabuchi T]]
 +
[[Category: Tanaka A]]

Current revision

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-5-005

PDB ID 4jdb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools