This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3koj
From Proteopedia
(Difference between revisions)
m (Protected "3koj" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3koj| PDB=3koj | SCENE= }} | ||
| - | ===Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.=== | ||
| - | == | + | ==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.== |
| - | [[3koj]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3koj' size='340' side='right'caption='[[3koj]], [[Resolution|resolution]] 1.90Å' scene=''> |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: Acton, T B | + | <table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KOJ FirstGlance]. <br> |
| - | [[Category: Ciccosanti, C | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Foote, L E | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Anacystis nidulans])</td></tr> |
| - | [[Category: Hunt, J F | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [https://pdbe.org/3koj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [https://www.ebi.ac.uk/pdbsum/3koj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3koj ProSAT]</span></td></tr> |
| - | [[Category: Janjua, H | + | </table> |
| - | [[Category: Montelione, G T | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Seetharaman, J | + | Check<jmol> |
| - | [[Category: Su, M | + | <jmolCheckbox> |
| - | [[Category: Tong, L | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3koj_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Vorobiev, S | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Wang, H | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Xiao, R | + | </jmolCheckbox> |
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3koj ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Anacystis nidulans]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Acton, T B]] | ||
| + | [[Category: Ciccosanti, C]] | ||
| + | [[Category: Foote, L E]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Janjua, H]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Su, M]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Vorobiev, S]] | ||
| + | [[Category: Wang, H]] | ||
| + | [[Category: Xiao, R]] | ||
[[Category: Dna binding protein]] | [[Category: Dna binding protein]] | ||
[[Category: Dna-binding]] | [[Category: Dna-binding]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: Northeast structural genomics consortium]] | ||
[[Category: Pf00436]] | [[Category: Pf00436]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Single-strand binding protein family]] | [[Category: Single-strand binding protein family]] | ||
[[Category: Snr59a]] | [[Category: Snr59a]] | ||
| - | [[Category: Structural genomic]] | ||
Current revision
Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.
| |||||||||||
Categories: Anacystis nidulans | Large Structures | Acton, T B | Ciccosanti, C | Foote, L E | Hunt, J F | Janjua, H | Montelione, G T | Structural genomic | Seetharaman, J | Su, M | Tong, L | Vorobiev, S | Wang, H | Xiao, R | Dna binding protein | Dna-binding | Nesg | Pf00436 | PSI, Protein structure initiative | Single-strand binding protein family | Snr59a
