3kmh

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{{STRUCTURE_3kmh| PDB=3kmh | SCENE= }}
 
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===Crystal Structure of a Novel Sugar Isomerase from E. coli O157:H7===
 
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{{ABSTRACT_PUBMED_20615418}}
 
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==About this Structure==
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==Crystal Structure of a Novel Sugar Isomerase from E. coli O157:H7==
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[[3kmh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o157:h7 Escherichia coli o157:h7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KMH OCA].
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<StructureSection load='3kmh' size='340' side='right'caption='[[3kmh]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3kmh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KMH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KMH FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPH:PHENOL'>IPH</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kmh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kmh OCA], [https://pdbe.org/3kmh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kmh RCSB], [https://www.ebi.ac.uk/pdbsum/3kmh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kmh ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8X5Q7_ECO57 Q8X5Q7_ECO57]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/3kmh_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kmh ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Prokaryotes can use a variety of sugars as carbon sources in order to provide a selective survival advantage. The gene z5688 found in the pathogenic Escherichia coli O157:H7 encodes a "hypothetical" protein of unknown function. Sequence analysis identified the gene product as a putative member of the cupin superfamily of proteins, but no other functional information was known. We have determined the crystal structure of the Z5688 protein at 1.6 A resolution and identified the protein as a novel E. coli sugar isomerase (EcSI) through overall fold analysis and secondary-structure matching. Extensive substrate screening revealed that EcSI is capable of acting on d-lyxose and d-mannose. The complex structure of EcSI with fructose allowed the identification of key active-site residues, and mutagenesis confirmed their importance. The structure of EcSI also suggested a novel mechanism for substrate binding and product release in a cupin sugar isomerase. Supplementation of a nonpathogenic E. coli strain with EcSI enabled cell growth on the rare pentose d-lyxose.
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==Reference==
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Structure-based annotation of a novel sugar isomerase from the pathogenic E. coli O157:H7.,van Staalduinen LM, Park CS, Yeom SJ, Adams-Cioaba MA, Oh DK, Jia Z J Mol Biol. 2010 Sep 3;401(5):866-81. Epub 2010 Jul 6. PMID:20615418<ref>PMID:20615418</ref>
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<ref group="xtra">PMID:020615418</ref><references group="xtra"/><references/>
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[[Category: D-lyxose ketol-isomerase]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Escherichia coli o157:h7]]
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</div>
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[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
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<div class="pdbe-citations 3kmh" style="background-color:#fffaf0;"></div>
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[[Category: Jia, Z.]]
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== References ==
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[[Category: Staalduinen, L M.van.]]
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<references/>
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[[Category: Bsgi]]
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__TOC__
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[[Category: Cupin beta-barrel]]
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</StructureSection>
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[[Category: Isomerase]]
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[[Category: Escherichia coli O157:H7]]
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[[Category: Montreal-kingston bacterial structural genomics initiative]]
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[[Category: Large Structures]]
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[[Category: Structural genomic]]
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[[Category: Jia Z]]
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[[Category: Van Staalduinen LM]]

Current revision

Crystal Structure of a Novel Sugar Isomerase from E. coli O157:H7

PDB ID 3kmh

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