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2dy3
From Proteopedia
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| - | [[Image:2dy3.jpg|left|200px]]<br /><applet load="2dy3" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2dy3, resolution 2.1Å" /> | ||
| - | '''Crystal Structure of alanine racemase from Corynebacterium glutamicum'''<br /> | ||
| - | == | + | ==Crystal Structure of alanine racemase from Corynebacterium glutamicum== |
| - | + | <StructureSection load='2dy3' size='340' side='right'caption='[[2dy3]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2dy3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DY3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DY3 FirstGlance]. <br> | |
| - | [ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dy3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dy3 OCA], [https://pdbe.org/2dy3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dy3 RCSB], [https://www.ebi.ac.uk/pdbsum/2dy3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dy3 ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | [[ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/ALR_CORGL ALR_CORGL] Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids (By similarity).[HAMAP-Rule:MF_01201] |
| - | [[ | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/2dy3_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dy3 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Alanine racemase 3D structures|Alanine racemase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Corynebacterium glutamicum]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Kato R]] | ||
| + | [[Category: Miyaguchi I]] | ||
| + | [[Category: Oikawa T]] | ||
| + | [[Category: Sasaki C]] | ||
| + | [[Category: Sugio S]] | ||
Current revision
Crystal Structure of alanine racemase from Corynebacterium glutamicum
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