2dyi

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[[Image:2dyi.gif|left|200px]]<br /><applet load="2dyi" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2dyi, resolution 2.00&Aring;" />
 
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'''Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8'''<br />
 
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==About this Structure==
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==Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8==
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2DYI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA].
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<StructureSection load='2dyi' size='340' side='right'caption='[[2dyi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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[[Category: Single protein]]
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== Structural highlights ==
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[[Category: Thermus thermophilus]]
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<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DYI FirstGlance]. <br>
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[[Category: Kaminishi, T.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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[[Category: Kawazoe, M.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [https://pdbe.org/2dyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [https://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dyi ProSAT], [https://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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</table>
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[[Category: Shirouzu, M.]]
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== Function ==
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[[Category: Takemoto, C.]]
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[https://www.uniprot.org/uniprot/RIMM_THET8 RIMM_THET8] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity).
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[[Category: Tatsuguchi, A.]]
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== Evolutionary Conservation ==
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[[Category: Yokoyama, S.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: 16s rrna processing]]
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Check<jmol>
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[[Category: national project on protein structural and functional analyses]]
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<jmolCheckbox>
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[[Category: nppsfa]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/2dyi_consurf.spt"</scriptWhenChecked>
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[[Category: prc-barrel]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: ribosomal protein s19]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: riken structural genomics/proteomics initiative]]
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</jmolCheckbox>
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[[Category: rsgi]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dyi ConSurf].
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[[Category: structural genomics]]
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<div style="clear:both"></div>
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__TOC__
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:04:06 2008''
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Thermus thermophilus HB8]]
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[[Category: Kaminishi T]]
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[[Category: Kawazoe M]]
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[[Category: Shirouzu M]]
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[[Category: Takemoto C]]
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[[Category: Tatsuguchi A]]
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[[Category: Yokoyama S]]

Current revision

Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8

PDB ID 2dyi

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