This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3kol
From Proteopedia
(Difference between revisions)
m (Protected "3kol" [edit=sysop:move=sysop]) |
|||
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3kol| PDB=3kol | SCENE= }} | ||
| - | ===Crystal structure of a glyoxalase/dioxygenase from Nostoc punctiforme=== | ||
| - | == | + | ==Crystal structure of a glyoxalase/dioxygenase from Nostoc punctiforme== |
| - | [[3kol]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3kol' size='340' side='right' caption='[[3kol]], [[Resolution|resolution]] 1.90Å' scene=''> |
| - | [[Category: | + | == Structural highlights == |
| - | [[Category: Burley, S K | + | <table><tr><td colspan='2'>[[3kol]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nosp7 Nosp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KOL FirstGlance]. <br> |
| - | [[Category: Eswaramoorthy, S | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr> |
| - | [[Category: | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[Category: Swaminathan, S | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Npun_R6391 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kol OCA], [http://pdbe.org/3kol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kol RCSB], [http://www.ebi.ac.uk/pdbsum/3kol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kol ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3kol_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kol ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Dioxygenase|Dioxygenase]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Nosp7]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Eswaramoorthy, S]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Swaminathan, S]] | ||
[[Category: Bleomycin resistance]] | [[Category: Bleomycin resistance]] | ||
[[Category: Dioxygenase]] | [[Category: Dioxygenase]] | ||
[[Category: Metal binding protein]] | [[Category: Metal binding protein]] | ||
[[Category: Metal ion binding]] | [[Category: Metal ion binding]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | [[Category: PSI, Protein structure initiative]] | |
| - | [[Category: Protein structure initiative | + | |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a glyoxalase/dioxygenase from Nostoc punctiforme
| |||||||||||
