3kpx
From Proteopedia
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| - | {{STRUCTURE_3kpx|  PDB=3kpx  |  SCENE=  }}  | ||
| - | ===Crystal Structure Analysis of photoprotein clytin=== | ||
| - | {{ABSTRACT_PUBMED_20926380}} | ||
| - | == | + | ==Crystal Structure Analysis of photoprotein clytin== | 
| - | [[3kpx]] is a 1 chain structure with sequence from [ | + | <StructureSection load='3kpx' size='340' side='right'caption='[[3kpx]], [[Resolution|resolution]] 1.90Å' scene=''> | 
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3kpx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clytia_gregaria Clytia gregaria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KPX FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.899Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CZH:C2-HYDROPEROXY-COELENTERAZINE'>CZH</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kpx OCA], [https://pdbe.org/3kpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kpx RCSB], [https://www.ebi.ac.uk/pdbsum/3kpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kpx ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/D7PM14_CLYGR D7PM14_CLYGR]  | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + |   <jmolCheckbox> | ||
| + |     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kp/3kpx_consurf.spt"</scriptWhenChecked> | ||
| + |     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + |     <text>to colour the structure by Evolutionary Conservation</text> | ||
| + |   </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kpx ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Forster resonance energy transfer within a protein-protein complex has previously been invoked to explain emission spectral modulation observed in several bioluminescence systems. Here we present a spatial structure of a complex of the Ca(2+)-regulated photoprotein clytin with its green-fluorescent protein (cgGFP) from the jellyfish Clytia gregaria, and show that it accounts for the bioluminescence properties of this system in vitro. We adopted an indirect approach of combining x-ray crystallography determined structures of the separate proteins, NMR spectroscopy, computational docking, and mutagenesis. Heteronuclear NMR spectroscopy using variously (15)N,(13)C,(2)H-enriched proteins enabled assignment of backbone resonances of more than 94% of the residues of both proteins. In a mixture of the two proteins at millimolar concentrations, complexation was inferred from perturbations of certain (1)H-(15)N HSQC-resonances, which could be mapped to those residues involved at the interaction site. A docking computation using HADDOCK was employed constrained by the sites of interaction, to deduce an overall spatial structure of the complex. Contacts within the clytin-cgGFP complex and electrostatic complementarity of interaction surfaces argued for a weak protein-protein complex. A weak affinity was also observed by isothermal titration calorimetry (K(D) = 0.9 mm). Mutation of clytin residues located at the interaction site reduced the degree of protein-protein association concomitant with a loss of effectiveness of cgGFP in color-shifting the bioluminescence. It is suggested that this clytin-cgGFP structure corresponds to the transient complex previously postulated to account for the energy transfer effect of GFP in the bioluminescence of aequorin or Renilla luciferase. | ||
| - | + | NMR-derived Topology of a GFP-photoprotein Energy Transfer Complex.,Titushin MS, Feng Y, Stepanyuk GA, Li Y, Markova SV, Golz S, Wang BC, Lee J, Wang J, Vysotski ES, Liu ZJ J Biol Chem. 2010 Dec 24;285(52):40891-900. Epub 2010 Oct 6. PMID:20926380<ref>PMID:20926380</ref> | |
| - | <ref  | + | |
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 3kpx" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| [[Category: Clytia gregaria]] | [[Category: Clytia gregaria]] | ||
| - | [[Category:  | + | [[Category: Large Structures]] | 
| - | [[Category: Lee | + | [[Category: Lee J]] | 
| - | [[Category: Li | + | [[Category: Li Y]] | 
| - | [[Category: Liu | + | [[Category: Liu Z-J]] | 
| - | [[Category: Stepanyuk | + | [[Category: Stepanyuk GA]] | 
| - | [[Category: Titushin | + | [[Category: Titushin MS]] | 
| - | [[Category: Vysotski | + | [[Category: Vysotski ES]] | 
| - | [[Category: Wang | + | [[Category: Wang B-C]] | 
| - | + | ||
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Current revision
Crystal Structure Analysis of photoprotein clytin
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Categories: Clytia gregaria | Large Structures | Lee J | Li Y | Liu Z-J | Stepanyuk GA | Titushin MS | Vysotski ES | Wang B-C

