3kz9

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{{STRUCTURE_3kz9| PDB=3kz9 | SCENE= }}
 
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===Crystal structure of the master transcriptional regulator, SmcR, in Vibrio vulnificus provides insight into its DNA recognition mechanism===
 
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{{ABSTRACT_PUBMED_20178981}}
 
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==About this Structure==
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==Crystal structure of the master transcriptional regulator, SmcR, in Vibrio vulnificus provides insight into its DNA recognition mechanism==
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[[3kz9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_vulnificus Vibrio vulnificus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZ9 OCA].
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<StructureSection load='3kz9' size='340' side='right'caption='[[3kz9]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3kz9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_vulnificus Vibrio vulnificus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KZ9 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kz9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kz9 OCA], [https://pdbe.org/3kz9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kz9 RCSB], [https://www.ebi.ac.uk/pdbsum/3kz9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kz9 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9L8G8_VIBVL Q9L8G8_VIBVL]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/3kz9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kz9 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Quorum sensing has been implicated as an important global regulatory system controlling the expression of numerous virulence factors in bacterial pathogens. SmcR, a homologue of Vibrio harveyi LuxR, has been proposed as a quorum-sensing master regulator of Vibrio vulnificus, an opportunistic human pathogen. Previous studies demonstrated that SmcR is essential for the survival and pathogenesis of V. vulnificus, indicating that inhibiting SmcR is an attractive approach to combat infections by the bacteria. Here, we determined the crystal structure of SmcR at 2.1 A resolution. The protein structure reveals a typical TetR superfamily fold consisting of an N-terminal DNA binding domain and a C-terminal dimerization domain. In vivo and in vitro functional analysis of the dimerization domain suggested that dimerization of SmcR is vital for its biological regulatory function. The N-terminal DNA recognition and binding residues were assigned based on the protein structure and the results of in vivo and in vitro mutagenesis experiments. Furthermore, protein-DNA interaction experiments suggested that SmcR may have a sophisticated mechanism that enables the protein to recognize each of its many target operators with different affinities.
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==Reference==
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Crystal structure of SmcR, a quorum-sensing master regulator of Vibrio vulnificus, provides insight into its regulation of transcription.,Kim Y, Kim BS, Park YJ, Choi WC, Hwang J, Kang BS, Oh TK, Choi SH, Kim MH J Biol Chem. 2010 Apr 30;285(18):14020-30. Epub 2010 Feb 23. PMID:20178981<ref>PMID:20178981</ref>
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<ref group="xtra">PMID:020178981</ref><references group="xtra"/><references/>
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[[Category: Vibrio vulnificus]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Choi, W C.]]
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</div>
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[[Category: Hwang, J.]]
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<div class="pdbe-citations 3kz9" style="background-color:#fffaf0;"></div>
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[[Category: Kim, M H.]]
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== References ==
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[[Category: Kim, Y.]]
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<references/>
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[[Category: Dna-binding]]
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__TOC__
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[[Category: Quorum sensing]]
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</StructureSection>
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[[Category: Smcr]]
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[[Category: Large Structures]]
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[[Category: Transcription regulation]]
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[[Category: Transcription regulator]]
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[[Category: Transcriptional regulator]]
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[[Category: Vibrio vulnificus]]
[[Category: Vibrio vulnificus]]
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[[Category: Choi W-C]]
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[[Category: Hwang J]]
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[[Category: Kim MH]]
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[[Category: Kim Y]]

Current revision

Crystal structure of the master transcriptional regulator, SmcR, in Vibrio vulnificus provides insight into its DNA recognition mechanism

PDB ID 3kz9

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