3lg2

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{{STRUCTURE_3lg2| PDB=3lg2 | SCENE= }}
 
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===A Ykr043C/ fructose-1,6-bisphosphate product complex following ligand soaking===
 
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{{ABSTRACT_PUBMED_20427268}}
 
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==About this Structure==
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==A Ykr043C/ fructose-1,6-bisphosphate product complex following ligand soaking==
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[[3lg2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG2 OCA].
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<StructureSection load='3lg2' size='340' side='right'caption='[[3lg2]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3lg2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LG2 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lg2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lg2 OCA], [https://pdbe.org/3lg2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lg2 RCSB], [https://www.ebi.ac.uk/pdbsum/3lg2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lg2 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SHB17_YEAST SHB17_YEAST] Sedoheptulose 1,7-bisphosphatase involved in riboneogenesis. Dephosphorylates sedoheptulose 1,7-bisphosphate (SBP), which is converted via the non-oxidative pentose phosphate pathway to ribose-5-phosphate. Has a fructose 1,6-bisphosphatase activity in vitro, but this is probably not biologically relevant, since deletion does not affect fructose 1,6-biphosphate (FBP) levels.<ref>PMID:21663798</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lg/3lg2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lg2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Fructose-1,6-bisphosphatase (FBPase), a key enzyme of gluconeogenesis and photosynthetic CO(2) fixation, catalyzes the hydrolysis of fructose 1,6-bisphosphate (FBP) to produce fructose 6-phosphate, an important precursor in various biosynthetic pathways. All known FBPases are metal-dependent enzymes, which are classified into five different classes based on their amino acid sequences. Eukaryotes are known to contain only the type-I FBPases, whereas all five types exist in various combinations in prokaryotes. Here we demonstrate that the uncharacterized protein YK23 from Saccharomyces cerevisiae efficiently hydrolyzes FBP in a metal-independent reaction. YK23 is a member of the histidine phosphatase (phosphoglyceromutase) superfamily with homologues found in all organisms. The crystal structure of the YK23 apo-form was solved at 1.75-A resolution and revealed the core domain with the alpha/beta/alpha-fold covered by two small cap domains. Two liganded structures of this protein show the presence of two phosphate molecules (an inhibitor) or FBP (a substrate) bound to the active site. FBP is bound in its linear, open conformation with the cleavable C1-phosphate positioned deep in the active site. Alanine replacement mutagenesis of YK23 identified six conserved residues absolutely required for activity and suggested that His(13) and Glu(99) are the primary catalytic residues. Thus, YK23 represents the first family of metal-independent FBPases and a second FBPase family in eukaryotes.
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==Reference==
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Structure and activity of the metal-independent fructose-1,6-bisphosphatase YK23 from Saccharomyces cerevisiae.,Kuznetsova E, Xu L, Singer A, Brown G, Dong A, Flick R, Cui H, Cuff M, Joachimiak A, Savchenko A, Yakunin AF J Biol Chem. 2010 Jul 2;285(27):21049-59. Epub 2010 Apr 28. PMID:20427268<ref>PMID:20427268</ref>
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<ref group="xtra">PMID:020427268</ref><references group="xtra"/><references/>
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[[Category: Fructose-bisphosphatase]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Saccharomyces cerevisiae]]
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</div>
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[[Category: Cui, H.]]
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<div class="pdbe-citations 3lg2" style="background-color:#fffaf0;"></div>
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[[Category: Dong, A.]]
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== References ==
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[[Category: Edwards, A M.]]
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<references/>
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[[Category: Joachimiak, A.]]
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__TOC__
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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</StructureSection>
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[[Category: Savchenko, A.]]
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[[Category: Large Structures]]
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[[Category: Singer, A.]]
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[[Category: Saccharomyces cerevisiae S288C]]
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[[Category: Xu, X.]]
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[[Category: Cui H]]
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[[Category: Yakunin, A F.]]
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[[Category: Dong A]]
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[[Category: Hydrolase]]
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[[Category: Edwards AM]]
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[[Category: Mcsg]]
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[[Category: Joachimiak A]]
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[[Category: Metal-independent]]
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[[Category: Savchenko A]]
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[[Category: Midwest center for structural genomic]]
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[[Category: Singer A]]
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[[Category: Protein structure initiative]]
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[[Category: Xu X]]
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[[Category: Psi-2]]
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[[Category: Yakunin AF]]
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[[Category: Structural genomic]]
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Current revision

A Ykr043C/ fructose-1,6-bisphosphate product complex following ligand soaking

PDB ID 3lg2

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