This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ly0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ly0" [edit=sysop:move=sysop])
Current revision (08:45, 6 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ly0| PDB=3ly0 | SCENE= }}
 
-
===Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala===
 
-
==About this Structure==
+
==Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala==
-
[[3ly0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LY0 OCA].
+
<StructureSection load='3ly0' size='340' side='right'caption='[[3ly0]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
[[Category: Rhodobacter sphaeroides]]
+
== Structural highlights ==
-
[[Category: Almo, S C.]]
+
<table><tr><td colspan='2'>[[3ly0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LY0 FirstGlance]. <br>
-
[[Category: Burley, S K.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.399&#8491;</td></tr>
-
[[Category: Cummings, J.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LY0:(2R)-3-[(R)-[(1R)-1-AMINOETHYL](HYDROXY)PHOSPHORYL]-2-METHYLPROPANOIC+ACID'>LY0</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: Fedorov, A A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ly0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ly0 OCA], [https://pdbe.org/3ly0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ly0 RCSB], [https://www.ebi.ac.uk/pdbsum/3ly0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ly0 ProSAT]</span></td></tr>
-
[[Category: Fedorov, E V.]]
+
</table>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
== Function ==
-
[[Category: Raushel, F M.]]
+
[https://www.uniprot.org/uniprot/Q3IZQ3_CERS4 Q3IZQ3_CERS4]
-
[[Category: Hydrolase]]
+
== Evolutionary Conservation ==
-
[[Category: Metallo peptidase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: New york sgx research center for structural genomic]]
+
Check<jmol>
-
[[Category: Nysgrc]]
+
<jmolCheckbox>
-
[[Category: Nysgxrc]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3ly0_consurf.spt"</scriptWhenChecked>
-
[[Category: Phosphinate inhibitor]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Psi-2]]
+
</jmolCheckbox>
-
[[Category: Structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ly0 ConSurf].
-
[[Category: Target 9523c]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Cereibacter sphaeroides 2 4.1]]
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Cummings J]]
 +
[[Category: Fedorov AA]]
 +
[[Category: Fedorov EV]]
 +
[[Category: Raushel FM]]

Current revision

Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala

PDB ID 3ly0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ly0"
Personal tools