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3lm4
From Proteopedia
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| - | {{STRUCTURE_3lm4| PDB=3lm4 | SCENE= }} | ||
| - | ===Crystal Structure of 2,3-Dihydroxy Biphenyl dioxygenase from Rhodococcus sp. (strain RHA1)=== | ||
| - | == | + | ==Crystal Structure of 2,3-Dihydroxy Biphenyl dioxygenase from Rhodococcus sp. (strain RHA1)== |
| - | [[3lm4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3lm4' size='340' side='right'caption='[[3lm4]], [[Resolution|resolution]] 1.80Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3lm4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM4 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3LM4 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HPX:(2Z,4E)-2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOIC+ACID'>HPX</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_2,3-dioxygenase Catechol 2,3-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.2 1.13.11.2] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3lm4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lm4 OCA], [http://pdbe.org/3lm4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lm4 RCSB], [http://www.ebi.ac.uk/pdbsum/3lm4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lm4 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lm4_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lm4 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Dioxygenase 3D structures|Dioxygenase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Catechol 2,3-dioxygenase]] | [[Category: Catechol 2,3-dioxygenase]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Burley, S K | + | [[Category: Rhojr]] |
| - | [[Category: Ibrahim, B Syed | + | [[Category: Burley, S K]] |
| - | [[Category: Kumaran, D | + | [[Category: Ibrahim, B Syed]] |
| - | [[Category: | + | [[Category: Kumaran, D]] |
| - | [[Category: Swaminathan, S | + | [[Category: Structural genomic]] |
| + | [[Category: Swaminathan, S]] | ||
[[Category: 2hydroxyl 6 oxo 6 phenyl hexa 2-4 dienoic acid]] | [[Category: 2hydroxyl 6 oxo 6 phenyl hexa 2-4 dienoic acid]] | ||
[[Category: Dioxygenase]] | [[Category: Dioxygenase]] | ||
| - | [[Category: New | + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] |
| - | + | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
[[Category: Peroxide]] | [[Category: Peroxide]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of 2,3-Dihydroxy Biphenyl dioxygenase from Rhodococcus sp. (strain RHA1)
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Categories: Catechol 2,3-dioxygenase | Large Structures | Rhojr | Burley, S K | Ibrahim, B Syed | Kumaran, D | Structural genomic | Swaminathan, S | 2hydroxyl 6 oxo 6 phenyl hexa 2-4 dienoic acid | Dioxygenase | NYSGXRC, New York SGX Research Center for Structural Genomics | Oxidoreductase | Peroxide | PSI, Protein structure initiative
