This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mcq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3mcq" [edit=sysop:move=sysop])
Current revision (11:45, 1 February 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3mcq| PDB=3mcq | SCENE= }}
 
-
===Crystal structure of Thiamine-monophosphate kinase (Mfla_0573) from METHYLOBACILLUS FLAGELLATUS KT at 1.91 A resolution===
 
-
==Function==
+
==Crystal structure of Thiamine-monophosphate kinase (Mfla_0573) from METHYLOBACILLUS FLAGELLATUS KT at 1.91 A resolution==
-
[[http://www.uniprot.org/uniprot/Q1H3U4_METFK Q1H3U4_METFK]] Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 (By similarity).[HAMAP-Rule:MF_02128]
+
<StructureSection load='3mcq' size='340' side='right'caption='[[3mcq]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[3mcq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylobacillus_flagellatus_KT Methylobacillus flagellatus KT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MCQ FirstGlance]. <br>
-
[[3mcq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methylobacillus_flagellatus Methylobacillus flagellatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MCQ OCA].
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
[[Category: Methylobacillus flagellatus]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mcq OCA], [https://pdbe.org/3mcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mcq RCSB], [https://www.ebi.ac.uk/pdbsum/3mcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mcq ProSAT]</span></td></tr>
-
[[Category: Thiamine-phosphate kinase]]
+
</table>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
== Function ==
-
[[Category: Jcsg]]
+
[https://www.uniprot.org/uniprot/Q1H3U4_METFK Q1H3U4_METFK] Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 (By similarity).[HAMAP-Rule:MF_02128]
-
[[Category: Joint center for structural genomic]]
+
== Evolutionary Conservation ==
-
[[Category: Protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Psi-2]]
+
Check<jmol>
-
[[Category: Structural genomic]]
+
<jmolCheckbox>
-
[[Category: Transferase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mc/3mcq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mcq ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Methylobacillus flagellatus KT]]

Current revision

Crystal structure of Thiamine-monophosphate kinase (Mfla_0573) from METHYLOBACILLUS FLAGELLATUS KT at 1.91 A resolution

PDB ID 3mcq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools