3lyv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:09, 6 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3lyv| PDB=3lyv | SCENE= }}
 
-
===Crystal structure of a domain of ribosome-associated factor Y from streptococcus pyogenes serotype M6. Northeast Structural Genomics Consortium target id DR64A===
 
-
==About this Structure==
+
==Crystal structure of a domain of ribosome-associated factor Y from streptococcus pyogenes serotype M6. Northeast Structural Genomics Consortium target id DR64A==
-
[[3lyv]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYV OCA].
+
<StructureSection load='3lyv' size='340' side='right'caption='[[3lyv]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
[[Category: Streptococcus pyogenes]]
+
== Structural highlights ==
-
[[Category: Acton, T B.]]
+
<table><tr><td colspan='2'>[[3lyv]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_M6 Streptococcus pyogenes serotype M6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LYV FirstGlance]. <br>
-
[[Category: Baran, M C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
[[Category: Cunningham, K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Forouhar, F.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lyv OCA], [https://pdbe.org/3lyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lyv RCSB], [https://www.ebi.ac.uk/pdbsum/3lyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lyv ProSAT]</span></td></tr>
-
[[Category: Hunt, J F.]]
+
</table>
-
[[Category: Janjua, H.]]
+
== Function ==
-
[[Category: Liu, J.]]
+
[https://www.uniprot.org/uniprot/HPF_STRP6 HPF_STRP6] Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.[HAMAP-Rule:MF_00839]
-
[[Category: Montelione, G T.]]
+
== Evolutionary Conservation ==
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Neely, H.]]
+
Check<jmol>
-
[[Category: Owens, L.]]
+
<jmolCheckbox>
-
[[Category: Seetharaman, J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyv_consurf.spt"</scriptWhenChecked>
-
[[Category: Tong, L.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Wang, D.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Xiao, R.]]
+
</jmolCheckbox>
-
[[Category: Chaperone]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lyv ConSurf].
-
[[Category: Nesg]]
+
<div style="clear:both"></div>
-
[[Category: Northeast structural genomics consortium]]
+
__TOC__
-
[[Category: Protein structure initiative]]
+
</StructureSection>
-
[[Category: Psi-2]]
+
[[Category: Large Structures]]
-
[[Category: Ribosomal protein s30ae family]]
+
[[Category: Streptococcus pyogenes serotype M6]]
-
[[Category: Structural genomic]]
+
[[Category: Acton TB]]
 +
[[Category: Baran MC]]
 +
[[Category: Cunningham K]]
 +
[[Category: Forouhar F]]
 +
[[Category: Hunt JF]]
 +
[[Category: Janjua H]]
 +
[[Category: Liu J]]
 +
[[Category: Montelione GT]]
 +
[[Category: Neely H]]
 +
[[Category: Owens L]]
 +
[[Category: Seetharaman J]]
 +
[[Category: Tong L]]
 +
[[Category: Wang D]]
 +
[[Category: Xiao R]]

Current revision

Crystal structure of a domain of ribosome-associated factor Y from streptococcus pyogenes serotype M6. Northeast Structural Genomics Consortium target id DR64A

PDB ID 3lyv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools