3ln9

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{{STRUCTURE_3ln9| PDB=3ln9 | SCENE= }}
 
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===Crystal structure of the fibril-specific B10 antibody fragment===
 
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{{ABSTRACT_PUBMED_21059358}}
 
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==About this Structure==
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==Crystal structure of the fibril-specific B10 antibody fragment==
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[[3ln9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Camelidae Camelidae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LN9 OCA].
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<StructureSection load='3ln9' size='340' side='right'caption='[[3ln9]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3ln9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Camelidae Camelidae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LN9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LN9 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ln9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ln9 OCA], [https://pdbe.org/3ln9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ln9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ln9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ln9 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Amyloid fibrils are naturally occurring polypeptide scaffolds with considerable importance for human health and disease. These supermolecular assemblies are beta-sheet rich and characterized by a high structural order. Clinical diagnosis and emerging therapeutic strategies of amyloid-dependent diseases, such as Alzheimer's, rely on the specific recognition of amyloid structures by other molecules. Recently, we generated the B10 antibody fragment, which selectively binds to Alzheimer's Abeta(1-40) amyloid fibrils but does not explicitly recognize other protein conformers, such as oligomers and disaggregated Abeta peptide. B10 presents poly-amyloid specific binding and interacts with fibrillar structures consisting of different polypeptide chains. To determine the molecular basis behind its specificity, we have analyzed the molecular properties of B10 with a battery of biochemical and biophysical techniques, ranging from X-ray crystallography to chemical modification studies. We find that fibril recognition depends on positively charged residues within the B10 antigen binding site. Mutation of these basic residues into alanine potently impairs fibril binding, and reduced B10-fibril interactions are also observed when the fibril carboxyl groups are covalently masked by a chemical modification approach. These data imply that the B10 conformational specificity for amyloid fibrils depends upon specific electrostatic interactions with an acidic moiety, which is common to different amyloid fibrils.
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==Reference==
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Amyloid Fibril Recognition with the Conformational B10 Antibody Fragment Depends on Electrostatic Interactions.,Haupt C, Morgado I, Kumar ST, Parthier C, Bereza M, Hortschansky P, Stubbs MT, Horn U, Fandrich M J Mol Biol. 2010 Nov 6. PMID:21059358<ref>PMID:21059358</ref>
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<ref group="xtra">PMID:021059358</ref><references group="xtra"/><references/>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3ln9" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Antibody 3D structures|Antibody 3D structures]]
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*[[3D structures of non-human antibody|3D structures of non-human antibody]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Camelidae]]
[[Category: Camelidae]]
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[[Category: Faendrich, M.]]
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[[Category: Large Structures]]
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[[Category: Morgado, I.]]
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[[Category: Faendrich M]]
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[[Category: Parthier, C.]]
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[[Category: Morgado I]]
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[[Category: Stubbs, M T.]]
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[[Category: Parthier C]]
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[[Category: Alzheimer's disease]]
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[[Category: Stubbs MT]]
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[[Category: Amyloid]]
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[[Category: Camelid]]
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[[Category: Cdr]]
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[[Category: Complementarity determining region]]
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[[Category: Fibril recognition]]
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[[Category: Fibril-specific]]
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[[Category: Immune system]]
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[[Category: Immunoglobulin heavy chain]]
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Current revision

Crystal structure of the fibril-specific B10 antibody fragment

PDB ID 3ln9

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