3m2t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:58, 17 October 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3m2t| PDB=3m2t | SCENE= }}
 
-
===The crystal structure of dehydrogenase from Chromobacterium violaceum===
 
-
==About this Structure==
+
==The crystal structure of dehydrogenase from Chromobacterium violaceum==
-
[[3m2t]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M2T OCA].
+
<StructureSection load='3m2t' size='340' side='right'caption='[[3m2t]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
[[Category: Chromobacterium violaceum]]
+
== Structural highlights ==
-
[[Category: Burley, S K.]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M2T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M2T FirstGlance]. <br>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
[[Category: Swaminathan, S.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Zhang, Z.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m2t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m2t OCA], [https://pdbe.org/3m2t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m2t RCSB], [https://www.ebi.ac.uk/pdbsum/3m2t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m2t ProSAT]</span></td></tr>
-
[[Category: New york sgx research center for structural genomic]]
+
</table>
-
[[Category: Nysgxrc]]
+
== Evolutionary Conservation ==
-
[[Category: Oxidoreductase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Protein structure initiative]]
+
Check<jmol>
-
[[Category: Psi]]
+
<jmolCheckbox>
-
[[Category: Sgxny]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m2/3m2t_consurf.spt"</scriptWhenChecked>
-
[[Category: Structural genomic]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m2t ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Burley SK]]
 +
[[Category: Swaminathan S]]
 +
[[Category: Zhang Z]]

Current revision

The crystal structure of dehydrogenase from Chromobacterium violaceum

PDB ID 3m2t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools