3lm8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3lm8" [edit=sysop:move=sysop])
Current revision (09:23, 30 October 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3lm8| PDB=3lm8 | SCENE= }}
 
-
===Crystal Structure of Thiamine pyrophosphokinase from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR677===
 
-
==Function==
+
==Crystal Structure of Thiamine pyrophosphokinase from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR677==
-
[[http://www.uniprot.org/uniprot/THIN_BACSU THIN_BACSU]] Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate.
+
<StructureSection load='3lm8' size='340' side='right'caption='[[3lm8]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[3lm8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LM8 FirstGlance]. <br>
-
[[3lm8]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM8 OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=VIB:3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM'>VIB</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lm8 OCA], [https://pdbe.org/3lm8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lm8 RCSB], [https://www.ebi.ac.uk/pdbsum/3lm8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lm8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/THIN_BACSU THIN_BACSU] Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lm8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lm8 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
-
[[Category: Thiamine diphosphokinase]]
+
[[Category: Large Structures]]
-
[[Category: Abashidze, M.]]
+
[[Category: Abashidze M]]
-
[[Category: Acton, T B.]]
+
[[Category: Acton TB]]
-
[[Category: Ciccosanti, C.]]
+
[[Category: Ciccosanti C]]
-
[[Category: Everett, J K.]]
+
[[Category: Everett JK]]
-
[[Category: Foote, E L.]]
+
[[Category: Foote EL]]
-
[[Category: Hunt, J F.]]
+
[[Category: Hunt JF]]
-
[[Category: Kuzin, A.]]
+
[[Category: Kuzin A]]
-
[[Category: Mao, M.]]
+
[[Category: Mao M]]
-
[[Category: Montelione, G T.]]
+
[[Category: Montelione GT]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Nair R]]
-
[[Category: Nair, R.]]
+
[[Category: Rost B]]
-
[[Category: Rost, B.]]
+
[[Category: Seetharaman J]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Tong L]]
-
[[Category: Tong, L.]]
+
[[Category: Wang H]]
-
[[Category: Wang, H.]]
+
[[Category: Xiao R]]
-
[[Category: Xiao, R.]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Kinase]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of Thiamine pyrophosphokinase from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR677

PDB ID 3lm8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3lm8"
Personal tools