This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mdq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3mdq" [edit=sysop:move=sysop])
Current revision (11:45, 1 February 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3mdq| PDB=3mdq | SCENE= }}
 
-
===Crystal structure of an Exopolyphosphatase (CHU_0316) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution===
 
-
==About this Structure==
+
==Crystal structure of an Exopolyphosphatase (CHU_0316) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution==
-
[[3mdq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cytophaga_hutchinsonii Cytophaga hutchinsonii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDQ OCA].
+
<StructureSection load='3mdq' size='340' side='right'caption='[[3mdq]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
[[Category: Cytophaga hutchinsonii]]
+
== Structural highlights ==
-
[[Category: Exopolyphosphatase]]
+
<table><tr><td colspan='2'>[[3mdq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_ATCC_33406 Cytophaga hutchinsonii ATCC 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MDQ FirstGlance]. <br>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Exopolyphosphatase]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mdq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mdq OCA], [https://pdbe.org/3mdq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mdq RCSB], [https://www.ebi.ac.uk/pdbsum/3mdq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mdq ProSAT]</span></td></tr>
-
[[Category: Hydrolase]]
+
</table>
-
[[Category: Jcsg]]
+
== Evolutionary Conservation ==
-
[[Category: Joint center for structural genomic]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Protein structure initiative]]
+
Check<jmol>
-
[[Category: Psi-2]]
+
<jmolCheckbox>
-
[[Category: Structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3mdq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mdq ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Cytophaga hutchinsonii ATCC 33406]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of an Exopolyphosphatase (CHU_0316) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution

PDB ID 3mdq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools