This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ei3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ei3" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ei3, resolution 1.90&Aring;" /> '''Anaerobic Crystal St...)
Current revision (08:40, 25 October 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ei3.jpg|left|200px]]<br /><applet load="2ei3" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ei3, resolution 1.90&Aring;" />
 
-
'''Anaerobic Crystal Structure Analysis of the 1,2-dihydroxynaphthalene dioxygenase from Pseudomonas sp. strain C18 complexes with 2,3-dihydroxybiphenyl'''<br />
 
-
==About this Structure==
+
==Anaerobic Crystal Structure Analysis of the 1,2-dihydroxynaphthalene dioxygenase from Pseudomonas sp. strain C18 complexes with 2,3-dihydroxybiphenyl==
-
2EI3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=FE2:'>FE2</scene>, <scene name='pdbligand=BPY:'>BPY</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+398'>AC1</scene>, <scene name='pdbsite=AC2:Fe2+Binding+Site+For+Residue+A+399'>AC2</scene>, <scene name='pdbsite=AC3:Bpy+Binding+Site+For+Residue+A+350'>AC3</scene>, <scene name='pdbsite=AC4:Bpy+Binding+Site+For+Residue+A+351'>AC4</scene>, <scene name='pdbsite=AC5:Bpy+Binding+Site+For+Residue+A+352'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Residue+A+901'>AC6</scene> and <scene name='pdbsite=AC7:Gol+Binding+Site+For+Residue+A+902'>AC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI3 OCA].
+
<StructureSection load='2ei3' size='340' side='right'caption='[[2ei3]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Pseudomonas sp.]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2ei3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._C18 Pseudomonas sp. C18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EI3 FirstGlance]. <br>
-
[[Category: Bolin, J T.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
[[Category: Colbert, C L.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Kelker, M S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ei3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei3 OCA], [https://pdbe.org/2ei3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ei3 RCSB], [https://www.ebi.ac.uk/pdbsum/2ei3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ei3 ProSAT]</span></td></tr>
-
[[Category: Neau, D B.]]
+
</table>
-
[[Category: BPY]]
+
== Function ==
-
[[Category: FE2]]
+
[https://www.uniprot.org/uniprot/NAHC_PSEU8 NAHC_PSEU8] Involved in the naphthalene catabolic pathway. Catalyzes the meta-cleavage of 1,2-dihydroxynaphthalene (1,2-DHN) to yield 2-hydroxychromene-2-carboxylic acid (By similarity).
-
[[Category: GOL]]
+
== Evolutionary Conservation ==
-
[[Category: MG]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: extradiol dioxygenase]]
+
Check<jmol>
-
[[Category: oxidoreductase]]
+
<jmolCheckbox>
-
[[Category: protein substrate complex]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/2ei3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ei3 ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:10:51 2008''
+
==See Also==
 +
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas sp. C18]]
 +
[[Category: Bolin JT]]
 +
[[Category: Colbert CL]]
 +
[[Category: Kelker MS]]
 +
[[Category: Neau DB]]

Current revision

Anaerobic Crystal Structure Analysis of the 1,2-dihydroxynaphthalene dioxygenase from Pseudomonas sp. strain C18 complexes with 2,3-dihydroxybiphenyl

PDB ID 2ei3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ei3"
Personal tools