This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3mvc
From Proteopedia
(Difference between revisions)
m (Protected "3mvc" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3mvc| PDB=3mvc | SCENE= }} | ||
| - | ===High resolution crystal structure of the heme domain of GLB-6 from C. elegans=== | ||
| - | {{ABSTRACT_PUBMED_20518498}} | ||
| - | == | + | ==High resolution crystal structure of the heme domain of GLB-6 from C. elegans== |
| - | [[3mvc]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3mvc' size='340' side='right'caption='[[3mvc]], [[Resolution|resolution]] 1.40Å' scene=''> |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3mvc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MVC FirstGlance]. <br> |
| - | < | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.401Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=PR:PRASEODYMIUM+ION'>PR</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mvc OCA], [https://pdbe.org/3mvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mvc RCSB], [https://www.ebi.ac.uk/pdbsum/3mvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mvc ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/GLOB6_CAEEL GLOB6_CAEEL] May play a role as physiological sensor for oxygen via redox signaling and/or electron transport.<ref>PMID:20518498</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mv/3mvc_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mvc ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Caenorhabditis elegans]] | [[Category: Caenorhabditis elegans]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Herzik Jr MA]] |
| - | [[Category: Marletta | + | [[Category: Marletta MA]] |
| - | + | [[Category: Olea Jr C]] | |
| - | + | [[Category: Tran R]] | |
| - | + | [[Category: Winter MB]] | |
| - | [[Category: C | + | [[Category: Yoon J]] |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | [[Category: | + | |
| - | + | ||
| - | + | ||
Current revision
High resolution crystal structure of the heme domain of GLB-6 from C. elegans
| |||||||||||
