This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3mml
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3mml| PDB=3mml | SCENE= }} | ||
| - | ===Allophanate Hydrolase Complex from Mycobacterium smegmatis, Msmeg0435-Msmeg0436=== | ||
| - | == | + | ==Allophanate Hydrolase Complex from Mycobacterium smegmatis, Msmeg0435-Msmeg0436== |
| - | [[3mml]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <StructureSection load='3mml' size='340' side='right' caption='[[3mml]], [[Resolution|resolution]] 2.50Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3mml]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycs2 Mycs2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MML OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MML FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Msmeg0435, MSMEG_0435 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246196 MYCS2]), Msmeg0436, MSMEG_0436 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246196 MYCS2])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allophanate_hydrolase Allophanate hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.54 3.5.1.54] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mml OCA], [http://pdbe.org/3mml PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mml RCSB], [http://www.ebi.ac.uk/pdbsum/3mml PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mml ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mm/3mml_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mml ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Allophanate hydrolase]] | [[Category: Allophanate hydrolase]] | ||
| - | [[Category: | + | [[Category: Mycs2]] |
| - | [[Category: Arbing, M A | + | [[Category: Arbing, M A]] |
| - | [[Category: Chernishof, I | + | [[Category: Chernishof, I]] |
| - | [[Category: Eisenberg, D | + | [[Category: Eisenberg, D]] |
| - | [[Category: Germano, D | + | [[Category: Germano, D]] |
| - | [[Category: ISFI, Integrated Center for Structure and Function Innovation | + | [[Category: ISFI, Integrated Center for Structure and Function Innovation]] |
| - | [[Category: Kaufmann, M | + | [[Category: Kaufmann, M]] |
| - | [[Category: Perry, J | + | [[Category: Perry, J]] |
| - | [[Category: Sawaya, M R | + | [[Category: Sawaya, M R]] |
| - | [[Category: Shin, A | + | [[Category: Shin, A]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: Waldo, G S | + | [[Category: Waldo, G S]] |
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Integrated center for structure and function innovation]] | [[Category: Integrated center for structure and function innovation]] | ||
[[Category: Isfi]] | [[Category: Isfi]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Tbsgc]] | [[Category: Tbsgc]] | ||
| - | [[Category: Tuberculosis structural genomics consortium]] | ||
Current revision
Allophanate Hydrolase Complex from Mycobacterium smegmatis, Msmeg0435-Msmeg0436
| |||||||||||
Categories: Allophanate hydrolase | Mycs2 | Arbing, M A | Chernishof, I | Eisenberg, D | Germano, D | ISFI, Integrated Center for Structure and Function Innovation | Kaufmann, M | Perry, J | Sawaya, M R | Shin, A | Structural genomic | Waldo, G S | Hydrolase | Integrated center for structure and function innovation | Isfi | PSI, Protein structure initiative | Tbsgc
