This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mjq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3mjq" [edit=sysop:move=sysop])
Current revision (05:40, 6 October 2021) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3mjq| PDB=3mjq | SCENE= }}
 
-
===Crystal structure of the PAS domain of Q24QT8_DESHY protein from Desulfitobacterium hafniense. Northeast Structural Genomics Consortium Target DhR85c.===
 
-
==About this Structure==
+
==Crystal structure of the PAS domain of Q24QT8_DESHY protein from Desulfitobacterium hafniense. Northeast Structural Genomics Consortium Target DhR85c.==
-
[[3mjq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MJQ OCA].
+
<StructureSection load='3mjq' size='340' side='right'caption='[[3mjq]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
[[Category: Desulfitobacterium hafniense]]
+
== Structural highlights ==
-
[[Category: Acton, T B.]]
+
<table><tr><td colspan='2'>[[3mjq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deshy Deshy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MJQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MJQ FirstGlance]. <br>
-
[[Category: Ciccosanti, C.]]
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Everett, J K.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DSY3815 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=138119 DESHY])</td></tr>
-
[[Category: Hunt, J F.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mjq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mjq OCA], [https://pdbe.org/3mjq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mjq RCSB], [https://www.ebi.ac.uk/pdbsum/3mjq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mjq ProSAT]</span></td></tr>
-
[[Category: Mao, L.]]
+
</table>
-
[[Category: Montelione, G T.]]
+
== Evolutionary Conservation ==
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Neely, H.]]
+
Check<jmol>
-
[[Category: Seetharaman, J.]]
+
<jmolCheckbox>
-
[[Category: Tong, L.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mj/3mjq_consurf.spt"</scriptWhenChecked>
-
[[Category: Vorobiev, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Wang, D.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Xiao, R.]]
+
</jmolCheckbox>
-
[[Category: Nesg]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mjq ConSurf].
-
[[Category: Northeast structural genomics consortium]]
+
<div style="clear:both"></div>
-
[[Category: Protein structure initiative]]
+
__TOC__
-
[[Category: Psi-2]]
+
</StructureSection>
 +
[[Category: Deshy]]
 +
[[Category: Large Structures]]
 +
[[Category: Acton, T B]]
 +
[[Category: Ciccosanti, C]]
 +
[[Category: Everett, J K]]
 +
[[Category: Hunt, J F]]
 +
[[Category: Mao, L]]
 +
[[Category: Montelione, G T]]
[[Category: Structural genomic]]
[[Category: Structural genomic]]
 +
[[Category: Neely, H]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Vorobiev, S]]
 +
[[Category: Wang, D]]
 +
[[Category: Xiao, R]]
 +
[[Category: Nesg]]
 +
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Crystal structure of the PAS domain of Q24QT8_DESHY protein from Desulfitobacterium hafniense. Northeast Structural Genomics Consortium Target DhR85c.

PDB ID 3mjq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools