3mw0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:40, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3mw0| PDB=3mw0 | SCENE= }}
 
-
===X-ray structure of the doubly hydroxylated iron complex-NikA species, NikA1/O2===
 
-
{{ABSTRACT_PUBMED_21107372}}
 
-
==About this Structure==
+
==X-ray structure of the doubly hydroxylated iron complex-NikA species, NikA1/O2==
-
[[3mw0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MW0 OCA].
+
<StructureSection load='3mw0' size='340' side='right'caption='[[3mw0]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3mw0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MW0 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BHR:2-[2-[CARBOXYMETHYL-[(2-HYDROXYPHENYL)METHYL]AMINO]ETHYL-[(2,3-DIHYDROXYPHENYL)METHYL]AMINO]ETHANOIC+ACID'>BHR</scene>, <scene name='pdbligand=DTD:DITHIANE+DIOL'>DTD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mw0 OCA], [https://pdbe.org/3mw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mw0 RCSB], [https://www.ebi.ac.uk/pdbsum/3mw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mw0 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NIKA_ECOLI NIKA_ECOLI] Involved in a nickel transport system, probably represents the nickel binder.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Chemical reactions inside single crystals are quite rare because crystallinity is difficult to retain owing to atomic rearrangements. Protein crystals in general have a high solvent content. This allows for some molecular flexibility, which makes it possible to trap reaction intermediates of enzymatic reactions without disrupting the crystal lattice. A similar approach has not yet been fully implemented in the field of inorganic chemistry. Here, we have combined model chemistry and protein X-ray crystallography to study the intramolecular aromatic dihydroxylation by an arene-containing protein-bound iron complex. The bound complex was able to activate dioxygen in the presence of a reductant, leading to the formation of catechol as the sole product. The structure determination of four of the catalytic cycle intermediates and the end product showed that the hydroxylation reaction implicates an iron peroxo, generated by reductive O(2) activation, an intermediate already observed in iron monooxygenases. This strategy also provided unexpected mechanistic details such as the rearrangement of the iron coordination sphere on metal reduction.
-
==Reference==
+
Crystallographic snapshots of the reaction of aromatic C-H with O(2) catalysed by a protein-bound iron complex.,Cavazza C, Bochot C, Rousselot-Pailley P, Carpentier P, Cherrier MV, Martin L, Marchi-Delapierre C, Fontecilla-Camps JC, Menage S Nat Chem. 2010 Dec;2(12):1069-76. Epub 2010 Oct 10. PMID:21107372<ref>PMID:21107372</ref>
-
<ref group="xtra">PMID:021107372</ref><references group="xtra"/><references/>
+
 
-
[[Category: Escherichia coli]]
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Nickel-transporting ATPase]]
+
</div>
-
[[Category: Bochot, C.]]
+
<div class="pdbe-citations 3mw0" style="background-color:#fffaf0;"></div>
-
[[Category: Carpentier, P.]]
+
 
-
[[Category: Cavazza, C.]]
+
==See Also==
-
[[Category: Cherrier, M V.]]
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
[[Category: Fontecilla-Camps, J C.]]
+
== References ==
-
[[Category: Marchi-Delapierre, C.]]
+
<references/>
-
[[Category: Martin, L.]]
+
__TOC__
-
[[Category: Menage, S.]]
+
</StructureSection>
-
[[Category: Rousselot-Pailley, P.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Protein-bound iron complex]]
+
[[Category: Large Structures]]
-
[[Category: Transport protein]]
+
[[Category: Bochot C]]
 +
[[Category: Carpentier P]]
 +
[[Category: Cavazza C]]
 +
[[Category: Cherrier MV]]
 +
[[Category: Fontecilla-Camps JC]]
 +
[[Category: Marchi-Delapierre C]]
 +
[[Category: Martin L]]
 +
[[Category: Menage S]]
 +
[[Category: Rousselot-Pailley P]]

Current revision

X-ray structure of the doubly hydroxylated iron complex-NikA species, NikA1/O2

PDB ID 3mw0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools