4jd8
From Proteopedia
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| - | {{STRUCTURE_4jd8| PDB=4jd8 | SCENE= }} | ||
| - | ===Racemic-[Ru(phen)2(dppz)]2+] bound to synthetic DNA at high resolution=== | ||
| - | == | + | ==Racemic-[Ru(phen)2(dppz)]2+] bound to synthetic DNA at high resolution== |
| - | [[4jd8]] is a 2 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4e87 4e87]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JD8 OCA]. | + | <StructureSection load='4jd8' size='340' side='right'caption='[[4jd8]], [[Resolution|resolution]] 1.16Å' scene=''> |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[4jd8]] is a 2 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4e87 4e87]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JD8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JD8 FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.16Å</td></tr> |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0TN:DELTA-RU(PHEN)2(DPPZ)+COMPLEX'>0TN</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=RKP:LAMBDA-RU(PHEN)2(DPPZ)+COMPLEX'>RKP</scene></td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jd8 OCA], [https://pdbe.org/4jd8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jd8 RCSB], [https://www.ebi.ac.uk/pdbsum/4jd8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jd8 ProSAT]</span></td></tr> |
| - | [[Category: | + | </table> |
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We report an atomic resolution X-ray crystal structure containing both enantiomers of rac-[Ru(phen)2dppz](2+) with the d(ATGCAT)2 DNA duplex (phen = phenanthroline; dppz = dipyridophenazine). The first example of any enantiomeric pair crystallized with a DNA duplex shows different orientations of the Lambda and Delta binding sites, separated by a clearly defined structured water monolayer. Job plots show that the same species is present in solution. Each enantiomer is bound at a TG/CA step and shows intercalation from the minor groove. One water molecule is directly located on one phenazine N atom in the Delta-enantiomer only. | ||
| + | |||
| + | X-ray Crystal Structure of rac-[Ru(phen)2dppz](2+) with d(ATGCAT)2 Shows Enantiomer Orientations and Water Ordering.,Hall JP, Cook D, Morte SR, McIntyre P, Buchner K, Beer H, Cardin DJ, Brazier JA, Winter G, Kelly JM, Cardin CJ J Am Chem Soc. 2013 Aug 28;135(34):12652-9. doi: 10.1021/ja403590e. Epub 2013 Aug, 14. PMID:23875832<ref>PMID:23875832</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 4jd8" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Cardin CJ]] | ||
| + | [[Category: Cook DS]] | ||
| + | [[Category: Hall JP]] | ||
Current revision
Racemic-[Ru(phen)2(dppz)]2+] bound to synthetic DNA at high resolution
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