4e9b

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{{STRUCTURE_4e9b| PDB=4e9b | SCENE= }}
 
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===Structure of Peptide Deformylase form Helicobacter Pylori in complex with actinonin===
 
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==Function==
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==Structure of Peptide Deformylase form Helicobacter Pylori in complex with actinonin==
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[[http://www.uniprot.org/uniprot/Q672W7_HELPX Q672W7_HELPX]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
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<StructureSection load='4e9b' size='340' side='right'caption='[[4e9b]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[4e9b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E9B FirstGlance]. <br>
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[[4e9b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E9B OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e9b OCA], [https://pdbe.org/4e9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e9b RCSB], [https://www.ebi.ac.uk/pdbsum/4e9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e9b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q672W7_HELPX Q672W7_HELPX] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
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__TOC__
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</StructureSection>
[[Category: Helicobacter pylori]]
[[Category: Helicobacter pylori]]
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[[Category: Peptide deformylase]]
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[[Category: Large Structures]]
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[[Category: Cui, K.]]
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[[Category: Cui K]]
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[[Category: Huang, J.]]
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[[Category: Huang J]]
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[[Category: Lu, W.]]
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[[Category: Lu W]]
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[[Category: Zhu, L.]]
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[[Category: Zhu L]]
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[[Category: Hydrolase-hydrolase inhibtior complex]]
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Current revision

Structure of Peptide Deformylase form Helicobacter Pylori in complex with actinonin

PDB ID 4e9b

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