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3ngf
From Proteopedia
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| - | {{STRUCTURE_3ngf| PDB=3ngf | SCENE= }} | ||
| - | ===Crystal structure of AP endonuclease, family 2 from Brucella melitensis=== | ||
| - | == | + | ==Crystal structure of AP endonuclease, family 2 from Brucella melitensis== |
| - | [[http://www.uniprot.org/uniprot/Q2YLA2_BRUA2 Q2YLA2_BRUA2 | + | <StructureSection load='3ngf' size='340' side='right'caption='[[3ngf]], [[Resolution|resolution]] 1.80Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3ngf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brucella_abortus_2308 Brucella abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NGF FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ngf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ngf OCA], [https://pdbe.org/3ngf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ngf RCSB], [https://www.ebi.ac.uk/pdbsum/3ngf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ngf ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q2YLA2_BRUA2 Q2YLA2_BRUA2] Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) (By similarity).[PIRNR:PIRNR006241] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ng/3ngf_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ngf ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | [[ | + | *[[Endonuclease 3D structures|Endonuclease 3D structures]] |
| - | [[Category: Brucella abortus]] | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | + | [[Category: Brucella abortus 2308]] | |
| - | + | [[Category: Large Structures]] | |
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Current revision
Crystal structure of AP endonuclease, family 2 from Brucella melitensis
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