2f7r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:58, 30 October 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2f7r.jpg|left|200px]]<br /><applet load="2f7r" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2f7r, resolution 1.350&Aring;" />
 
-
'''Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol'''<br />
 
-
==About this Structure==
+
==Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol==
-
2F7R is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster] with <scene name='pdbligand=NAG:'>NAG</scene>, <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=SK3:'>SK3</scene> and <scene name='pdbligand=MPD:'>MPD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Mannosyl-oligosaccharide_1,3-1,6-alpha-mannosidase Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.114 3.2.1.114] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F7R OCA].
+
<StructureSection load='2f7r' size='340' side='right'caption='[[2f7r]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
-
[[Category: Drosophila melanogaster]]
+
== Structural highlights ==
-
[[Category: Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase]]
+
<table><tr><td colspan='2'>[[2f7r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F7R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F7R FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
-
[[Category: Kuntz, D A.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SK3:(1R,2R,3S,4S,5R)-5-(BENZYLAMINO)CYCLOPENTANE-1,2,3,4-TETROL'>SK3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: Rose, D R.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f7r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f7r OCA], [https://pdbe.org/2f7r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f7r RCSB], [https://www.ebi.ac.uk/pdbsum/2f7r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f7r ProSAT]</span></td></tr>
-
[[Category: MPD]]
+
</table>
-
[[Category: NAG]]
+
== Function ==
-
[[Category: SK3]]
+
[https://www.uniprot.org/uniprot/MAN2_DROME MAN2_DROME] Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway (By similarity).
-
[[Category: ZN]]
+
== Evolutionary Conservation ==
-
[[Category: glycosyl hydrolase family 38]]
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f7/2f7r_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f7r ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:18:33 2008''
+
==See Also==
 +
*[[Mannosidase 3D structures|Mannosidase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Drosophila melanogaster]]
 +
[[Category: Large Structures]]
 +
[[Category: Kuntz DA]]
 +
[[Category: Rose DR]]

Current revision

Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol

PDB ID 2f7r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools