This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3nrj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3nrj" [edit=sysop:move=sysop])
Current revision (09:19, 6 September 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3nrj| PDB=3nrj | SCENE= }}
 
-
===Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a complexed with magnesium===
 
-
==About this Structure==
+
==Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a complexed with magnesium==
-
[[3nrj]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._phaseolicola Pseudomonas syringae pv. phaseolicola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NRJ OCA].
+
<StructureSection load='3nrj' size='340' side='right'caption='[[3nrj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Pseudomonas syringae pv. phaseolicola]]
+
== Structural highlights ==
-
[[Category: Almo, S C.]]
+
<table><tr><td colspan='2'>[[3nrj]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_savastanoi_pv._phaseolicola_1448A Pseudomonas savastanoi pv. phaseolicola 1448A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NRJ FirstGlance]. <br>
-
[[Category: Burley, S K.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
[[Category: Freeman, J.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nrj OCA], [https://pdbe.org/3nrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nrj RCSB], [https://www.ebi.ac.uk/pdbsum/3nrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nrj ProSAT]</span></td></tr>
-
[[Category: Patskovsky, Y.]]
+
</table>
-
[[Category: Ramagopal, U.]]
+
== Function ==
-
[[Category: Sauder, J M.]]
+
[https://www.uniprot.org/uniprot/Q48EB9_PSE14 Q48EB9_PSE14]
-
[[Category: Toro, R.]]
+
== Evolutionary Conservation ==
-
[[Category: Hydrolase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: New york sgx research center for structural genomic]]
+
Check<jmol>
-
[[Category: New york structural genomix research consortium]]
+
<jmolCheckbox>
-
[[Category: Nysgxrc]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nr/3nrj_consurf.spt"</scriptWhenChecked>
-
[[Category: Phosphatase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Psi]]
+
</jmolCheckbox>
-
[[Category: Structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3nrj ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas savastanoi pv. phaseolicola 1448A]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Freeman J]]
 +
[[Category: Patskovsky Y]]
 +
[[Category: Ramagopal U]]
 +
[[Category: Sauder JM]]
 +
[[Category: Toro R]]

Current revision

Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a complexed with magnesium

PDB ID 3nrj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools