This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ooq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:13, 11 August 2016) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3ooq| PDB=3ooq | SCENE= }}
 
-
===CRYSTAL STRUCTURE OF amidohydrolase from Thermotoga maritima MSB8===
 
-
==About this Structure==
+
==CRYSTAL STRUCTURE OF amidohydrolase from Thermotoga maritima MSB8==
-
[[3ooq]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOQ OCA].
+
<StructureSection load='3ooq' size='340' side='right' caption='[[3ooq]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
-
[[Category: Thermotoga maritima]]
+
== Structural highlights ==
-
[[Category: Almo, S C.]]
+
<table><tr><td colspan='2'>[[3ooq]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Thema Thema]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OOQ FirstGlance]. <br>
-
[[Category: Burley, S K.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
[[Category: Malashkevich, V N.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AE001811_9, TM_1723 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 THEMA])</td></tr>
-
[[Category: Sauder, J M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ooq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ooq OCA], [http://pdbe.org/3ooq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ooq RCSB], [http://www.ebi.ac.uk/pdbsum/3ooq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ooq ProSAT]</span></td></tr>
-
[[Category: Toro, R.]]
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3ooq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ooq ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Thema]]
 +
[[Category: Almo, S C]]
 +
[[Category: Burley, S K]]
 +
[[Category: Malashkevich, V N]]
 +
[[Category: Structural genomic]]
 +
[[Category: Sauder, J M]]
 +
[[Category: Toro, R]]
[[Category: Crystal structure]]
[[Category: Crystal structure]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

CRYSTAL STRUCTURE OF amidohydrolase from Thermotoga maritima MSB8

3ooq, resolution 2.06Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools