3oix

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:55, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3oix| PDB=3oix | SCENE= }}
 
-
===Crystal structure of the putative dihydroorotate dehydrogenase from Streptococcus mutans===
 
-
{{ABSTRACT_PUBMED_21301083}}
 
-
==Function==
+
==Crystal structure of the putative dihydroorotate dehydrogenase from Streptococcus mutans==
-
[[http://www.uniprot.org/uniprot/Q8DVA1_STRMU Q8DVA1_STRMU]] Catalyzes the conversion of dihydroorotate to orotate (By similarity).[HAMAP-Rule:MF_00224]
+
<StructureSection load='3oix' size='340' side='right'caption='[[3oix]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3oix]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OIX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OIX FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.399&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oix FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oix OCA], [https://pdbe.org/3oix PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oix RCSB], [https://www.ebi.ac.uk/pdbsum/3oix PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oix ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8DVA1_STRMU Q8DVA1_STRMU] Catalyzes the conversion of dihydroorotate to orotate (By similarity).[HAMAP-Rule:MF_00224]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oi/3oix_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oix ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Streptococcus mutans is one of the pathogenic species involved in dental caries, especially in the initiation and development stages. Here, the crystal structure of SMU.595, a putative dihydroorotate dehydrogenase (DHOD) from S. mutans, is reported at 2.4 A resolution. DHOD is a flavin mononucleotide-containing enzyme which catalyzes the oxidation of L-dihydroorotate to orotate, which is the fourth step and the only redox reaction in the de novo biosynthesis of pyrimidine nucleotides. The reductive lysine-methylation procedure was applied in order to improve the diffraction qualities of the crystals. Analysis of the S. mutans DHOD crystal structure shows that this enzyme is a class 1A DHOD and also suggests potential sites that could be exploited for the design of highly specific inhibitors using the structure-based chemotherapeutic design technique.
-
==About this Structure==
+
Structure of the putative dihydroorotate dehydrogenase from Streptococcus mutans.,Liu Y, Gao ZQ, Liu CP, Xu JH, Li LF, Ji CN, Su XD, Dong YH Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Feb 1;67(Pt, 2):182-7. Epub 2011 Jan 21. PMID:21301083<ref>PMID:21301083</ref>
-
[[3oix]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OIX OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:021301083</ref><references group="xtra"/><references/>
+
</div>
 +
<div class="pdbe-citations 3oix" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Streptococcus mutans]]
[[Category: Streptococcus mutans]]
-
[[Category: Dong, Y H.]]
+
[[Category: Dong YH]]
-
[[Category: Gao, Z Q.]]
+
[[Category: Gao ZQ]]
-
[[Category: Liu, C P.]]
+
[[Category: Liu CP]]
-
[[Category: Liu, Y.]]
+
[[Category: Liu Y]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Tim barrel]]
+

Current revision

Crystal structure of the putative dihydroorotate dehydrogenase from Streptococcus mutans

PDB ID 3oix

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3oix"
Personal tools